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토마토 MABC 육종에서 GBS(genotyping-by-sequencing)에 의한 RPG(recurrent parent genome) 회복률 분석
김종희,정유진,서훈교,김명권,노일섭,강권규,Kim, Jong Hee,Jung, Yu Jin,Seo, Hoon Kyo,Kim, Myong-Kwon,Nou, Ill-Sup,Kang, Kwon Kyoo The Korean Society of Plant Biotechnology 2019 식물생명공학회지 Vol.46 No.3
Marker-assisted backcrossing (MABC)은 marker-assisted selection (MAS)와 함께 다양한 작물에서 여교배 초기세대에서 반복친 게놈의 회복률이 높은 개체선발을 위한 분자육종 기술로 매우 유용하게 사용하고 있다. 본 연구에서는 토마토 MABC 육종 프로그램의 일환으로 저장성이 강한 rin유전자를 주)토마토연구소에서 육성한 핑크계 엘리트 토마토계통에 도입하고자 수행하였다. foreground 선발은 RIN SCAR 분자 마커를 이용하여 100개 $BC_1F_1$ 식물체에서 Rr 유전자형 가진 42개체를 선발하였다. 그리고 이를 이용하여 GBS 분석을 이용하여 background 선발을 하였다. 총 3,086개 SNP를 대상으로 반복친 HK13-1151과 게놈 회복률을 조사한 결과, 56.7%에서 84.5%를 보여 평균 70.5%로 나타났다. 이 중 87.2%을 보인 $BC_1F_1$개체를 이용하여 192개 $BC_2F_1$ 식물체를 육성하여 foreground 선발을 하였다. 선발된 102개 중 88개 식물체를 이용하여 GBS 분석을 수행한 결과 4,868개의 다형 SNP 마커를 얻었으며, 이를 이용하여 RPG 회복률을 조사하였다. $BC_2F_1$ 식물체들에서 HK13-1151 반복친 게놈과 87.8%에서 97.8% 유사하였다. 본 연구에서 $BC_2F_1$ 식물 중 RPG 회복률이 97.8%인 5-1 개체는 반복친인 HK13-1151과 과일특성에서 매우 유사하였다. 따라서 선발된 5-1 개체는 $BC_2F_2$ 세대를 육성하여 계통화 하고자 한다. 본 연구를 통해 MABC는 전통 여교배 육종에 비해 육종연한을 획기적으로 줄일 수 있으며, 원하는 육종모델을 완수할 수 있는 첨단육종 기술로 평가 할 수 있다. Marker-assisted backcrossing (MABC) is useful for selecting an offspring with a highly recovered genetic background for a recurrent parent at early generation to various crops. Moreover, marker-assisted backcrossing (MABC) along with marker-assisted selection (MAS) contributes immensely to overcome the main limitation of the conventional breeding and it accelerates recurrent parent genome (RPG) recovery. In this study, we were employed to incorporate rin gene(s) from the donor parent T13-1084, into the genetic background of HK13-1151, a popular high-yielding tomato elite inbred line that is a pink color fruit, in order to develop a rin HK13-1084 improved line. The recurrent parent genome recovery was analyzed in early generations of backcrossing using SNP markers obtained from genotyping-by-sequencing analysis. From the $BC_1F_1$ and $BC_2F_1$ plants, 3,086 and 4868 polymorphic SNP markers were obtained via GBS analysis, respectively. These markers were present in all twelve chromosomes. The background analysis revealed that the extent of RPG recovery ranged from 56.7% to 84.5% and from 87.8% to 97.8% in $BC_1F_1$ and $BC_2F_1$ generations, respectively. In this study, No 5-1 with 97.8% RPG recovery rate among $BC_2F_1$ plants was similar to HK13-1151 strain in the fruit shape. Therefore, the selected plants were fixed in $BC_2F_2$ generation through selfing. MAS allowed identification of the plants that are more similar to the recurrent parent for the loci evaluated in the backcross generations. MABC can greatly reduce breeding time as compared to the conventional backcross breeding. For instance, MABC approach greatly shortened breeding time in tomato.
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토마토 MABC 육종에서 GBS(genotyping-by-sequencing)에 의한 RPG(recurrent parent genome) 회복률 분석
정유진,강권규,김종희,서훈교,김명권,노일섭 한국식물생명공학회 2019 JOURNAL OF PLANT BIOTECHNOLOGY Vol.46 No.3
Marker-assisted backcrossing (MABC) is useful for selecting an offspring with a highly recovered genetic background for a recurrent parent at early generation to various crops. Moreover, marker-assisted backcrossing (MABC) along with marker-assisted selection (MAS) contributes immensely to overcome the main limitation of the conventional breeding and it accelerates recurrent parent genome (RPG) recovery. In this study, we were employed to incorporate rin gene(s) from the donor parent T13-1084, into the genetic background of HK13-1151, a popular highyielding tomato elite inbred line that is a pink color fruit, in order to develop a rin HK13-1084 improved line. The recurrent parent genome recovery was analyzed in early generations of backcrossing using SNP markers obtained from genotyping-by-sequencing analysis. From the BC1F1 and BC2F1 plants, 3,086 and 4868 polymorphic SNP markers were obtained via GBS analysis, respectively. These markers were present in all twelve chromosomes. The background analysis revealed that the extent of RPG recovery ranged from 56.7% to 84.5% and from 87.8% to 97.8% in BC1F1 and BC2F1 generations, respectively. In this study, No 5-1 with 97.8% RPG recovery rate among BC2F1 plants was similar to HK13-1151 strain in the fruit shape. Therefore, the selected plants were fixed in BC2F2 generation through selfing. MAS allowed identification of the plants that are more similar to the recurrent parent for the loci evaluated in the backcross generations. MABC can greatly reduce breeding time as compared to the conventional backcross breeding. For instance, MABC approach greatly shortened breeding time in tomato.
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