Comparative Analysis of Pepper (Capsicum annuum L.) Varieties Using Morphological Characters, AFLP and SSR Markers

권용삼,문지영,이승인,배경미,서은희,조일호,김병동 한국유전학회 2007 Genes & Genomics Vol.29 No.1

their informational content and efficiency in using a genetic relationship analysis and variety identification approach among 60 comercial varieties of peppers. SR analysis presented some higher level of polymorphism as asesed by PIC value than AFLP. The total of AFLP, SR and phenotypic data were used to calculate genetic distance coeficients for cluster analysis using ing of the 60 varieties with the diferent marker systems, although there were some differences in the positioning of certain varieties at the main group. No significant correlation was found betwen DNA markers and morphological data. Nevertheles, the combination of SSR and morphological trait-based clustering was clearly diferentiated for al varieties studied and indicated the zed to protect plant breeders’ rights through the establishment of an acceptable minimum genetic distance betwen any pair of plant varieties.

벼 종자배양에서 Copper가 캘러스 형성 및 식물체 재분화에 미치는 영향

권용삼,손재근 한국식물생명공학회 2001 식물생명공학회지 Vol.28 No.4

벼의 종자배양에서 식물체 재분화 능력을 향상시키기 위하여 2 mg/L의 2,4-D와 여러 가지 농도의 copper (0~5.0mg/L)가 첨가된 MS배지에 종자배양 한 바 캘러스 생장정도는 copper 농도에 따라 다르게 나타났는데 특히, 2.5 mg/L의 copper가 첨가된 배지에서 가장 양호하였다. 그리고 캘러스 형성률과 copper 농도 간에는 유의성 있는 차이가 인정되지 않았다. 식물체 재분화 배지에 2.5 mg/L의 copper의 첨가는 Indica 품종들의 식물체 재분화 효율을 크게 향상시켰다. Copper가 첨가되지 않은 N$_{6}$배지에서 Indica 6품종의 평균재분화율은 2.4%이었으나, copper가 첨가된 배지에서 27.4%로 높게 나타났다. This study was conducted to improve the regeneration efficiency from seed-derived calli of rice by optimizing the copper concentrations in the media. Mature seeds were cultured on MS medium supplemented with copper sulphate (0 to 5.0 mg/L) and 2 mg/L 2,4-D. Callus growth was influenced by the levels of copper sulphate containing with medium, The addition of copper sulphate (2.5 mg/L) in regeneration medium enhanced dramatically the ability of plant regeneration from seed-derived calli. The mean frequency of plant regeneration of 6 indica rices was 27.4% on medium containing copper sulphate, whereas that of the cultivars on copper-free medium was 2.4%. These results suggest that copper sulphate may have an important role in improving regeneration ability of indica rices.

Simple Sequence Repeat (SSR) Marker를 이용한 토마토 품종 식별

권용삼,박은경,배경미,이승인,박순기,조일호,Kwon, Yong-Sham,Park, Eun-Kyung,Bae, Kyung-Mi,Yi, Seung-In,Park, Soon-Gi,Cho, Il-Ho 한국식물생명공학회 2006 식물생명공학회지 Vol.33 No.4

국내에서 유통되고 있는 토마토 품종의 판별 방법에 SSR marker의 이용 가능성에 대한 연구를 수행하여 얻어진 결과를 요약하면 다음과 같다. 토마토 28품종을 18개의 SSR marker를 이용하여 분석하였을 때 대립유전자의 수는 $2{\sim}9$개로 비교적 다양한 분포를 나타내었으며 전체 60개의 대립유전자가 분석되었다. PIC 값은 $0.476 {\sim}0.800$ 범위에 속하였으며 평균값은 0.607로 나타났다. SSR marker를 이용하여 작성된 토마토 28품종의 품종간 유전적 거리는 $0.35{\sim}0.97$의 범위로 나타났고, 유사도 지수 0.36을 기준으로 할 때 28개 품종은 체리형 토마토 그룹과 일반형 토마토 그룹으로 나눌 수 있었으며, 공시 품종 모두 SSR marker의 genotype에 의해 뚜렷이 구분되었다. 이 연구결과는 토마토의 품종식별에 기초 자료로 유용하게 이용될 수 있는 것으로 나타났다. This study was carried out to evaluate the suitability of simple sequence repeat (SSR) markers for varietal identification and genetic diversity in 28 commercial tomato varieties. The relationship between marker genotypes and 28 varieties was analyzed. Of the 219 pairs of SSR primers screened against ten tomato varieties, 18 pairs were highly polymorphic with polymorphism information content (PIC) ranging from 0.467 to 0.800. Among the polymorphic loci, two to nine SSR alleles were detected for each locus with an average of 3.3 alleles per locus. Genetic distances were estimated according to Jaccard's methods based on the probability that the amplified fragment from one genotype would be present in another genotype. These varieties were categorized into cherry and classic fruit groups corresponding to varietal types and genetic distance of cluster ranging from 0.35 to 0.97. The phonogram discriminated all varieties by marker genotypes. The SSR markers proved to be useful variety identification and genetic resource analysis of tomato.

이점 대각 이차 근사화 기법과 통계적 제한조건을 적용한 강건 최적설계 기법

권용삼,김민수,김종립,최동훈,Kwon, Yong-Sam,Kim, Min-Soo,Kim, Jong-Rip,Choi, Dong-Hoon 대한기계학회 2002 大韓機械學會論文集A Vol.26 No.12

This study presents an efficient method for robust optimal design. In order to avoid the excessive evaluations of the exact performance functions, two-point diagonal quadratic approximation method is employed for approximating them during optimization process. This approximation method is one of the two point approximation methods. Therefore, the second order sensitivity information of the approximated performance functions are calculated by an analytical method. As a result, this enables one to avoid the expensive evaluations of the exact $2^{nd}$ derivatives of the performance functions unlike the conventional robust optimal design methods based on the gradient information. Finally, in order to show the numerical performance of the proposed method, one mathematical problem and two mechanical design problems are solved and their results are compared with those of the conventional methods.

핵심 Microsatellite 마커를 이용한 한국 콩 품종에 대한 Fingerprinting 분석

권용삼,Kwon, Yong-Sham 한국식물생명공학회 2016 식물생명공학회지 Vol.43 No.4

핵심 microsatellite 마커를 활용하여 우리나라에서 품종보호출원 및 등록된 콩 148 품종에 대한 DNA 프로파일 데이터베이스를 구축한 다음 유전적 유사도 분석을 통한 품종 식별력 정도를 조사하였다. 콩 148품종을 120개의 microsatellite 마커로 검정하고 밴드의 패턴이 명확하고 다형성 정도가 높은 핵심 마커 16개의 대립유전자의 수는 6 ~ 28개로 나타났고 평균 대립유전자의 수는 12.75개였다. PIC 값은 0.753 ~ 0.951 사이에 분포하였고 평균값은 0.863으로 아주 높았다. 콩 148 품종에 대하여 Jaccard 방법에 따라 유전적 유사도를 설정한 다음 비가중 산술평균결합에 의해 집괴분석하여 계통도를 작성하였을 때, 콩의 품종 유형 및 품종 육성 계보에 따라 5개의 대그룹으로 나누어졌으며 모든 품종이 식별이 가능하였다. 본 연구에서 콩 품종식별용 핵심 microsatellite는 품종보호출원 품종의 구별성, 균일성, 안정성의 확인, 품종진 위성과 관련된 종자분쟁, 종자 순도 관리에 매우 유용하게 활용될 수 있을 것이다. Microsatellites are one of the most suitable markers for identification of variety, as they have the capability to discriminate between narrow genetic variations. The polymorphism level between 120 microsatellite primer pairs and 148 soybean varieties was investigated through the fluorescence based automatic detection system. A set of 16 primer pairs showed highly reproducible polymorphism in these varieties. A total of 204 alleles were detected using the 16 microsatellite markers. The number of alleles per locus ranged from 6 to 28, with an average of 12.75 alleles per locus. The average polymorphism information content (PIC) was 0.86, ranging from 0.75 to 0.95. The unweighted pair group method using the arithmetic averages (UPGMA) cluster analysis for 148 varieties were divided into five distinctive groups, reflecting the varietal types and pedigree information. All the varieties were perfectly discriminated by marker genotypes. These markers may be useful to complement a morphological assessment of candidate varieties in the DUS (distinctness, uniformity and stability) test, intervening of seed disputes relating to variety authentication, and testing of genetic purity in soybean varieties.

Informative SSR markers for commercial variety discrimination in watermelon (Citrullus lanatus)

권용삼,오유환,이승인,김희열,안종문,양승균,옥승한,신정섭 한국유전학회 2010 Genes & Genomics Vol.32 No.2

SSR markers were used for variety discrimination and genetic assessment in watermelon varieties. Genetic characterization of 49 watermelon varieties was investigated using 30 SSR markers developed from melon and watermelon. A total of 121 polymorphic amplified fragments were obtained by using 30 SSR markers. The average polymorphism information content (PIC) was 0.502 ranging from 0.223 to 0.800. One hundred twenty one SSR loci were used to calculate Jaccard’s distance coefficients for unweighted pair group method using the arithmetic averages (UPGMA) cluster analysis. A clustering group of varieties, based on the results of SSR analysis,were categorized into 5 major groups corresponding to morphological traits. Inheritance mode of 2 SSR markers was investigated to F1 plants and F2 populations of 2 crosses. Parental alleles were transmitted from F1 plants and F2 populations. Therefore, these marker sets may prove to be effectively applicable to genetic assessment of germplasm, genome mapping,and fingerprinting of watermelon varieties.

벼 약배양에서 콜히친이 식물체 배수성에 미치는 영양

권용삼,이형규,박규환,손재근 한국식물생명공학회 2001 식물생명공학회지 Vol.28 No.1

벼의 약배양 배지 내에 콜히친 첨가에 의한 염색체 배가 방법을 확립하기 위하여, 콜히친의 농도를 0.001∼0.1 mg/L까지 조절하여 약배양하였을 때 콜히친의 농도가 증가할수록 캘러스 형성률과 식물체 분화율은 점점 감소하였으며, 그 감소폭은 농도가 증가됨에 따라 점점 커지는 경향이었다. 자포니카 3품종과 통일형 1품종을 콜히친이 첨가되지 않은 배지에 약배양하였을 때 반수체의 출현빈도가 50%이상 높게 나타난 반면, 이배체는 40% 이하의 낮은 발생빈도를 나타내었다. 그러나 0.001 mg/L의 콜히친이 약배양 배지에 첨가될 경우 품종에 따라 다소간의 차이는 있으나, 반수체의 출현빈도는 상대적으로 감소되고 이배체의 발생 비율이 54.3∼60%로 증가하였다. To optimize the in uitro chromosome doubling procedure in anther cultures of rice, anthers were cultured on callus induction medium with 0.001 to 0.1 mg/L colchicine for 30 days. The addition of colchicine slightly reduced callus formation and plant regeneration in comparison to the colchicine-free medium (control medium). This reduction was greater with higher concentration colchicine. Microspore-derived rice plants in control medium were found to be mainly haploid (50 to 58.8%) and doubled-haploid (31 to 40%) in anther culture of 3 Japonica and 1 Tonsil type cultivars. The application of 0.001 mg/L colchicine was increased to 54.3∼60.0% in the frequency of fertile doubled-haploid plants. These results indicate that the addition of colchicine to the callus induction medium is an efficient means to obtain doubled-haploid plants in anther cultures of rice.

벼의 종자배양에서 배의 성숙정도와 Celrie 농도가 캘러스 형성 및 식물체 재분화에 미치는 영향

권용삼,김경민,김도훈,손재근 한국생명과학회 2001 생명과학회지 Vol.11 No.4

To identify the effects embryo developmental stage and gelrite concentration on plant regeneration in seed culture of rice, mature and immature seeds of rice were cultured on the $N_{6}$ medium supplemented with2 mg/$\ell$ 2.4-D and different levels of gelrite(0.2~1.0%). The calli formed immature embryos were produced more plants than those from mature embryos. The maximum frequency of plant regeneration was achieved in the culture of the calli of immature embryos which was harvested at the 21$^{th}$ day after pollination. The plant regeneration on the medium with gelrite was more accelerate than that on the medium with agar. The highest frequency(55%) of plant regeneration was obtained from the calli transferred to the medium with 6g/$\ell$ gelrite.

A comparative Study of the RAPD and SSR Markers in Establishing a Genetic Relationship of the Various Types of Cucurbita

권용삼,류태흠,김창훈,송인호,김경민 한국유전학회 2004 Genes & Genomics Vol.26 No.2

Inter-simple sequence repeat (ISSR) marker를 이용한 수박의 품종간 유연관계 분석

권용삼,이원식,조일호,Kwon Yong-Sham,Lee Won-Sik,Cho Il-Ho 한국생명과학회 2006 생명과학회지 Vol.16 No.2

Inter-simple sequence repeat (ISSR) analysis were used to assess genetic diversity among 18 genotypes of watermelon (Citrullus lanatus Thunb.) including breeding lines and commercial varieties. The 21 ISSR primers selected from 100 primers were showed the amplification of 105 reproducible fragments ranging from about 200 bp to 5000 bp. A total of 58 DNA fragments were polymorphic with an average 2.7 polymorphic bands per primer. The polymorphic primers were divided into 18 anchored primers and 3 non anchored primers. All of the anchored primers were di-nucleotide repeat motif, and was more polymorphic than non anchored primers. Eighteen watermelon genotypes were classified into two large groups. Clustering was in some accordance with the division of fruit shape into 18 watermelon. Therefore, ISSR markers may be suitable for variety discrimination and for constructing a linkage map of watermelon. ISSR markers를 이용하여 수박 18품종의 유전적 유연관계를 분석하여 얻어진 결과를 요약하면 다음과 같다. 수박 18품종의 genomic DNA와 ISSR primer 100개를 PCR 반응시킨 결과 다형성을 뚜렷하게 나타내는 primer는 21개 이였으며, 이들 primer에 의해 증폭된 밴드는 105개 이였고 다형성을 보이는 밴드는 58개 였으며 증폭된 DNA 단편의 크기는 $0.2{\sim}5.0kb$ 사이에 위치하였다. 다형성을 나타낸 primer는 18개의 anchored primer와 3개의 non-anchored primer로 구분되었고 모든 anchored primer는 2개의 염기서열이 반복된 형태를 나타내었으며, non-anchored primer보다. 다형성 정도가 높게 나타났다. 수박 18품종은 유전적 유사도 값 0.42를 기준으로 할 때 18개 품종을 2개의 그룹 으로 구분할 수 있었으며, 국내에서 육성된 품종은 유전적 유사도가 아주 높은 것으로 분석 되었고, 이들 품종은 수박의 과형에 따라 유사하게 구분되었다.