조효소를 함유하지 않는 효모의 Homocysteine 분해효소, Cystathionine ${\beta}$-Synthase의 생화학적 특성

지광한,조현남,양선아,이인선,Jhee, Kwang-Hwan,Cho, Hyun-Nam,Yang, Seun-Ah,Lee, In-Seun 한국미생물·생명공학회 2007 한국미생물·생명공학회지 Vol.35 No.3

본 연구에서는 최근 심혈관 순환계의 새로운 위험인자로 등장한 homocysteine을 생체 내에서 전환시키는 효소인 cystathionine ${\beta}$-synthase의 돌연변이에 관한 연구를 수행하였다. 인간의 cystathionine ${\beta}$-synthase에 돌연변이가 생기면 그 효소활성에 문제가 발생하여 homocysteine이 생체에 축적되어 부작용을 일으키는 homocystinuria라는 유전병이 생기게 되는데 여러 돌연변이 중 G3O7이 serine으로 치환된 돌연변이가 많은 비중을 차지한다. 한편 인간의 cystathionine ${\beta}$-synthase는 heme을 prosthetic group로 가지고 있어서 여러 스펙트럼 연구에 장애가 있으나, 같은 기능을 갖고 인간의 cystathionine ${\beta}$-synthase와 높은 상동성를 가지는 효모 유래의 cystathionine ${\beta}$-synthase는 heme을 포함하고 있지 않아 스펙트럼 연구에 용이한 점을 이용하여 인간의 G3O7에 해당하는 G247의 부위를 serine으로 치환, 정제하여 그 생화학적 특성을 살펴보았다. 효모의 G247S는 C 말단이 잘린 truncated form과 전체단백질이 모두 함유된 full length form의 두 가지를 이용하여 실험하였다. 두 돌연변이 단백질 모두에서 기질로써 L-homocysteine과 L-serine을 이용한 방사선 동위원소 $C^{14}$을 사용하여 활성을 측정한 바 활성이 전혀 검출되지 않았으며 ${\beta}$-mercaptoethanol과 L-cysteine을 기질로 이용한 방법에서도 황화수소를 검출할 수 없었다. 또한 UV-visible spectrum과 CD spectrum에서도 PLP의 특이적인 흡수지대인 410 nm에서의 흡수를 전혀 검출 할 수 없었다. 또한 PLP의 검출방법인 KCN과의 incubation실험에서도 PLP를 검출할 수 없었다. 보고된 인간 cystathionine ${\beta}$-synthase 결정3차 구조를 분석하여 본 바, G307은 조효소 PLP의 근방에 위치하여 bulky한 R group인 serine으로 치환될 경우 효소와 PLP의 결합을 극도로 저지하여 활성을 저지하는 것으로 생각된다 G247S를 고농도의 PLP와 incubation하여도 활성이 회복되지 않으며 단백질로의 PLP의 incorporation이 관찰되지 않았다. 이는 인간의 G307S환자가 PLP를 투여하여도 병세의 호전이 없는 이유를 설명하고 있다. 결론적으로 G307S 돌연변이에 기인한 homocystinuria 환자는 CBS의 활성이 전무하며 PLP의 투여에도 효과가 없음이 효모를 이용한 본 연구에서 확인되었다. Mutations in the cystathionine ${\beta}$-synthase (CBS) gene cause homocystinuria, the most frequent inherited disorder in sulfur metabolism. CBS is the unique enzyme using both heme and pyridoxal 5-phosphate (PLP) for activity. Among the reported 140 mutations, one of the most common disease-causing alterations in human CBS is G307S mutation. To investigate the pathogenic mechanism of G307S by spectroscopic methods, we engineered the full length and the truncated G247S mutation of yeast CBS that is corresponding mutation to human G307S. Yeast CBS does not contain heme and thus gives a merit to study the spectroscopic properties. The UV-visible spectra of the purified full length and the truncated G247S yeast CBSs showed the total absence of PLP in the protein. The absence of PLP in G247S mutation was also confirmed by the PLP-cyanide adduct formation experiment, which was conducted by the incubation of the purified enzyme with KCN. The adducts were detected using a circular dichroism (CD) and a spectrofluorimeter. Radio isotope activity assay of full length and truncated G247S proteins also gave no activity. Our yeast G247S mutation data suggested that G307S might make the distortion of the active site so that cofactor PLP and substrate can not fit inside the active site. Our yeast CBS study addressed the reason why the G307S mutation in human CBS makes the enzyme inactive that consequently leads to severe clinical phenotype.

High Intensity Exercise Induced a Redistribution of Pyridoxal 5-Phosphate Levels with Different Vitamin $B_6$ Status in Rats

Cho, Youn-Ok The Korean Nutrition Society 2000 Nutritional Sciences Vol.3 No.1

The purpose of this study was to compare the changes in PLP concentrations induced by regular, moderate, and abrupt, high-intensity exercise in the plasma and tissues of vitamin B6 deficient and normal rats. Forty-eight rats were fed either a vitamin B6 deficient (-B6) diet or a normal (+B6) diet for 5 weeks and were subdivided into 4 groups:non-exercise(NE) group: regular, moderate-intensity exercise (RME) group; abrupt, high-intensity exercise (AIE) group; abrupt, high-intensity exercise and recuperation(IRE) group. The RME group was exercised on treadmill ($10^{\circ}$, 0.5-0.8km/h) for 2 hours just before sacrifice at the end of 5th week on the diet and the IER group was recuperated for three days on the diet after being exercised like the AIE group. Pyridoxal 5 -phosphate(PLP) levels were compared in the plasma, liver and skeletal muscle of the rats. Plasma PLP concentration tended to decrease in -B6 rats and tended to increase in +B6 rats with AIE. Plasma PLP concentration in both +B6 rats with AIE and no change in both -B6 and +B6 rats with RME. Muscle PLP concentration decreased in +B6 rats, showed no change in -B6 rats with AIE. Muscle PLP concentrations in both +B6 and -B6 rats did not change with RME. Plasma PLP, liver PLP and muscle PLP concentration of IER returned to those of NE in both +B6 and -B6 rats. These results suggest that changes in PLP concentration in plasma, liver and muscle occur with exercise and are affected by exercise intensity and vitamin B6 status. These changes may be due to interorgan redistribution of PLP.

Conformational change of organic cofactor PLP is essential for catalysis in PLP-dependent enzymes

Ho-Phuong-Thuy Ngo,Diem-Quynh Nguyen,Hyunjae Park,Yoon Sik Park,Kiwoong Kwak,Taejoon Kim,Jang Ho Lee,Kyoung Sang Cho,강린우 생화학분자생물학회 2022 BMB Reports Vol.55 No.9

Pyridoxal 5’-phosphate (PLP)-dependent enzymes are ubiquitous,catalyzing various biochemical reactions of approximately 4%of all classified enzymatic activities. They transform amines andamino acids into important metabolites or signaling moleculesand are important drug targets in many diseases. In the crystalstructures of PLP-dependent enzymes, organic cofactor PLPshowed diverse conformations depending on the catalytic step. The conformational change of PLP is essential in the catalyticmechanism. In the study, we review the sophisticated catalyticmechanism of PLP, especially in transaldimination reactions. Most drugs targeting PLP-dependent enzymes make a covalentbond to PLP with the transaldimination reaction. A detailedunderstanding of organic cofactor PLP will help develop a newdrug against PLP-dependent enzymes.

Biotransformation of pyridoxal 5'-phosphate from pyridoxal by pyridoxal kinase (pdxY) to support cadaverine production in Escherichia coli

Kim, J.H.,Kim, J.,Kim, H.J.,Sathiyanarayanan, G.,Bhatia, S.K.,Song, H.S.,Choi, Y.K.,Kim, Y.G.,Park, K.,Yang, Y.H. IPC Science and Technology Press ; Elsevier Scienc 2017 Enzyme and microbial technology Vol.104 No.-

<P>Cadaverine, a five-carbon diamine (1,5-diaminopentane), can be made by fermentation or direct bioconversion and plays an important role as a building block of polyamides. Lysine decarboxylase (CadA) transforms L-lysine to cadaverine and pyridoxal 5'-phosphate (PLP) can increases conversion rate and yield as a cofactor. Biotransformation of cadaverine using whole Escherichia coli cells that overexpress the lysine decarboxylase has many merits, such as the rapid conversion of L-lysine to cadaverine, possible application of high concentration reactions up to the molar level, production of less byproduct and potential reuse of the enzyme by immobilization. However, the supply of PLP, which is a cofactor of lysine decarboxylase, is the major bottleneck in this system. Therefore, we initiated our study on PLP precursors and PLP-related enzymes and discovered that pyridoxal (PL) can be a viable alternative to supply PLP. Among various PLP systems examined, pyridoxal kinase (PdxY) showed the highest conversion of PL to PLP, resulting in more than 60% conversion of L-lysine to cadaverine with lysine decarboxylase. When the reaction with 0.4 M L-lysine, 0.2 mM PL and more whole cells was performed, it resulted in an 80% conversion yield. Furthermore, when barium-alginate immobilization was applied, it showed a 90% conversion yield in 1 h with PL, suggesting that it is compatible with developed whole-cell systems without a direct supply of exogenous PLP.</P>

Local Expression of $Mel_{la}$ and Effect of Melatonin on Expression of PLP-A Gene in the Rat Placenta

Shin, Chang-Sook,Lee, Chae-Kwan,Kang, Han-Seung,Kim, Haekwon,Yoon, Yong-Dal,Moon, Deog-Hwan,Kang, Sung-Goo The Korean Society of Developmental Biology 2001 발생과 생식 Vol.5 No.2

포유동물의 혈중 프로락틴 농도는 일주기와 연주기의 변화를 나타내며 송과체에서 분비되는 멜라토닌이 조절인자로 관여한다. 인위적인 송과체의 기능 억제는 혈중 프로락틴 농도를 증가시킨다. 임신 후반기에 태반에서는 수종의 프로락틴군 호르몬들이 분비되어 태반기능 및 배아발생에 중요한 역할을 한다. 그러나 이들 호르몬 유전자들의 발현 조절기작과 조절 인자들에 관한 연구 결과는 미비하다. 본 연구에서는 RT-PCR과, in situ hybridization 방법으로 흰쥐의 태반에서 Me $l_{la}$ 유전자의 발현을 확인하였다. 발현되는 주요 세포는 junctional zone과 labyrinth zone의 spongiotrophoblast 세포와 trophoblast giant세포였다. 특이한 것은junctional zone의 Me $l_{la}$ 유전자의 발현이 밤시간(22:00)에 비하여 낮시간(16:00)에 높게 조사되었다. 그리고 멜라토닌 수용체 agonist인 chloromelatonin은 PLP-A 유전자의 발현을 억제하였다. 이러한 결과들로 보아 흰쥐의 태반에서 Me $l_{la}$ 유전자가 발현되며, 멜라토닌에 의해 유도되는 Me $l_{la}$ 의 활성화는 PLP-A유전자의 발현에 중요한 조절인자로 작용할 것이다. Seasonal changes and circadian rhythm of plasma prolactin(PRL) concentration in mammals are mediated by melatonin. Pinealectomy or denervation of the pineal gland produces an increase in plasma PRL level. In the rat placenta several members of the PRL family gene are expressed during the late pregnancy. However, the full spectrum of their expression mechanisms and regulatory factors are not elucidated yet. Present study aimed to investigate the local expression of the melatonin receptor la(Me $l_{la}$ ) gene and the effect of melatonin on expression of prolactin-like protein A(PLP-A), a member of the PRL-family gene in the rat placenta. According to the RT-PCR, northern blot and in situ hybridization experiments, Me $l_{la}$ gene was locally expressed in the rat placenta, Me $l_{la}$ mRNA was localized mainly in the placental junctional and labyrinth zones. Interestingly, junctional zone of the placenta showed strong expression of Me $l_{la}$ at daytime(16:00) than at nighttime(22:00). Melatonin agonist, chlorornelatonin decreased the PLP-A mRNA levels in the rat placenta. These results suggest that melatonin coupled with Me $l_{la}$ , may act as a regulation factor that mediates the expression of the PLP-A gene in the rat placenta.

Evaluation of vitamin B6 intake and status of 20- to 64-year-old Koreans

Young-Nam Kim,Youn-Ok Cho 대한지역사회영양학회 2014 Nutrition Research and Practice Vol.8 No.6

BACKGROUND/OBJECTIVES: Recent research regarding vitamin B6 status including biochemical index is limited. Thus, this study estimated intakes and major food sources of vitamin B6; determined plasma pyridoxal 5´-phosphate (PLP); and assessed vitamin B6 status of Korean adults. MATERIALS/METHODS: Three consecutive 24-h diet recalls and fasting blood samples were collected from healthy 20- to 64- year-old adults (n = 254) living in the Seoul metropolitan area, cities of Kwangju and Gumi, Korea. Vitamin B6 intake and plasma PLP were analyzed by gender and by vitamin B6 supplementation. Pearson’s correlation coefficient was used to determine associations of vitamin B6 intake and plasma PLP. RESULTS: The mean dietary and total (dietary plus supplemental) vitamin B6 intake was 1.94 ± 0.64 and 2.41 ± 1.45 mg/day, respectively. Median (50th percentile) dietary intake of men and women was 2.062 and 1.706 mg/day. Foods from plant sources provided 70.61% of dietary vitamin B6 intake. Only 6.3% of subjects consumed total vitamin B6 less than Estimated Average Requirements. Plasma PLP concentration of all subjects was 40.03 ± 23.71 nmol/L. The concentration of users of vitamin B6 supplements was significantly higher than that of nonusers (P < 0.001). Approximately 16% of Korean adults had PLP levels < 20 nmol/L, indicating a biochemical deficiency of vitamin B6, while 19.7% had marginal vitamin B6 status. Plasma PLP concentration showed positive correlation with total vitamin B6 intake (r = 0.40984, P < 0.0001). CONCLUSIONS: In this study, vitamin B6 intake of Korean adults was generally adequate. However, one-third of subjects had vitamin B6 deficiency or marginal status. Therefore, in some adults in Korea, consumption of vitamin B6-rich food sources should be encouraged.

Local Expression of and Effect of Melatonin on Expression of PLP-A Gene in the Rat Placenta

Shin Chang-Sook,Lee Chae-Kwan,Kang Han-Seung,Kim Haekwon,Yoon Yong-Dal,Moon Deog-Hwan,Kang Sung-Goo 한국발생생물학회 2001 발생과 생식 Vol.5 No.2

포유동물의 혈중 프로락틴 농도는 일주기와 연주기의 변화를 나타내며 송과체에서 분비되는 멜라토닌이 조절인자로 관여한다. 인위적인 송과체의 기능 억제는 혈중 프로락틴 농도를 증가시킨다. 임신 후반기에 태반에서는 수종의 프로락틴군 호르몬들이 분비되어 태반기능 및 배아발생에 중요한 역할을 한다. 그러나 이들 호르몬 유전자들의 발현 조절기작과 조절 인자들에 관한 연구 결과는 미비하다. 본 연구에서는 RT-PCR과, in situ hybridization 방법으로 Seasonal changes and circadian rhythm of plasma prolactin(PRL) concentration in mammals are mediated by melatonin. Pinealectomy or denervation of the pineal gland produces an increase in plasma PRL level. In the rat placenta several members of the PRL family gene are expressed during the late pregnancy. However, the full spectrum of their expression mechanisms and regulatory factors are not elucidated yet. Present study aimed to investigate the local expression of the melatonin receptor la(Me ) gene and the effect of melatonin on expression of prolactin-like protein A(PLP-A), a member of the PRL-family gene in the rat placenta. According to the RT-PCR, northern blot and in situ hybridization experiments, Me gene was locally expressed in the rat placenta, Me mRNA was localized mainly in the placental junctional and labyrinth zones. Interestingly, junctional zone of the placenta showed strong expression of Me at daytime(16:00) than at nighttime(22:00). Melatonin agonist, chlorornelatonin decreased the PLP-A mRNA levels in the rat placenta. These results suggest that melatonin coupled with Me , may act as a regulation factor that mediates the expression of the PLP-A gene in the rat placenta.

PLP-1 Binds Nematode Double-stranded Telomeric DNA

이준호,Seol Hee Im 한국분자세포생물학회 2005 Molecules and cells Vol.20 No.2

The integrity and proper functioning of telomeres require association of telomeric DNA sequences with specific binding proteins. We have characterized PLP- 1, a PURα homolog encoded by F45E4.2, which we previously identified as a candidate double stranded telomere binding protein, by affinity chromatography followed by mass spectrometry. PLP-1 bound doublestranded telomeric DNA in vitro as shown by competition assays. Core binding was provided by the third and fourth nucleotides of the TTAGGC telomeric repeat. This is quite different from the binding sequence of CEH-37, another C. elegans telomere binding protein, suggesting that multiple proteins may bind nematode telomeric DNA simultaneously in vivo.

Pyridoxal-5′-phosphate phosphatase/chronophin inhibits long-term potentiation induction in the rat dentate gyrus

Kim, Ji-Eun,Kim, Dae-Won,Kwak, Sung-Eun,Ryu, Hea Jin,Yeo, Seong-Il,Kwon, Oh-Shin,Choi, Soo-Young,Kang, Tae-Cheon Wiley Subscription Services, Inc., A Wiley Company 2009 Hippocampus Vol.19 No.11

<P>Pyridoxal-5′-phosphate (PLP)-phosphatase/chronophin (PLPP/CIN) directly dephosphorylates actin-depolymerizing factor (ADF)/cofilin as well as PLP. Although PLPP/CIN plays a role in the regulation of F-actin and vitamin B<SUB>6</SUB> metabolism, there is no direct evidence to support a correlation between PLPP/CIN and F-actin polymerization during long-term potentiation (LTP) induction. In this study, we investigated whether the expression of PLPP/CIN is altered following LTP induction, and whether Tat-PLPP/CIN transduction affects LTP induction in the rat dentate gyrus (DG). PLPP/CIN immunoreactivity was markedly decreased in dentate granule cells after the induction of LTP. Tat-PLPP/CIN transduction (20 and 200 μg/kg) decreased the efficiency of high frequency stimulus-induced potentiation of populations spike amplitude as compared to saline or Tat-protein-treated animals. The PLPP/CIN protein level showed an inverse correlation with phosphorylated ADF/cofilin levels and F-actin content. These findings suggest that PLPP/CIN-mediated actin dynamics may play an important role in the changes of morphological properties (dendritic spine reorganization) of the hippocampus in LTP. © 2009 Wiley-Liss, Inc.</P>

Purification and Characterization of a New L-Methioninase from Solid Cultures of Aspergillus flavipes

Ashraf S. A. El-Sayed 한국미생물학회 2011 The journal of microbiology Vol.49 No.1

L-Methioninase was purified to electrophoretic homogeneity from cultures of Aspergillus flavipes using anionexchange and gel filtration chromatography by 12.1 fold compared to the crude enzyme preparation. The purified enzyme had a molecular mass of 47 kDa under denaturing conditions and an isoelectric point of 5.8 with no structural glycosyl residues. The enzyme had optimum activity at pH 7.8 and pH stability from 6.8-8.0 at 35°C. The enzyme appeared to be catalytically stable below 40°C. The enzyme activity was strongly inhibited by DL-propargylglycine, hydroxylamine, PMSF, 2-mercaptoethanol, Hg^(2+), Cu^(2+), and Fe^(2+), with slight inhibition by Triton X-100. A. flavipes L-methioninase has a higher catalytic affinity towards L-methionine (Km, 6.5 mM and Kcat, 14.1 S^(-1)) followed by a relative demethiolating activity to L-homocysteine (Km, 12 mM and Kcat, 9.3 S^(-1)). The enzyme has two absorption maxima at 280 and 420 nm,typical of other PLP-enzymes. Apo-L-methioninase has the ability to reconstitute its structural catalytic state completely upon addition of 0.15 mM PLP. L-Methioninase has neither an appreciable effect on liver function, platelet aggregation, nor hemolysis of human blood. The purified L-methioninase from solid cultures of A. flavipes displayed unique biochemical and catalytic properties over the currently applied Pseudomonad enzyme.