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효율적인 유전자 서열 비교를 위한 데이타베이스 검색 모델
김민준(Min Jun Kim),임성화(Sung-Hwa Lim),김재훈(Jai-Hoon Kim),이원태(Weontae Lee),정진원(Jin-Won Jung) 한국정보과학회 2004 정보과학회논문지 : 데이타베이스 Vol.31 No.3
대부분의 생물정보학의 프로그램들은 데이타베이스로부터 유전자 등의 데이타를 검색하고 처리하여 생화학자와 생물학자에게 서비스를 제공한다. 이때 각각 클라이언트의 요청마다 데이타베이스의 검색을 수행한다면 많은 디스크 접근 시간이 소요 된다. 또한 서버에 과부하를 초래하여 응답시간이 길어질 수 있다. 본 논문에서는 생물정보학에서 서열 검색 프로그램의 데이타베이스 사용 패턴을 이용하여 많은 데이타베이스 요청에 대하여 데이타베이스의 검색을 위한 디스크 접근을 공유하는 그룹핑 기법을 제안한다. 또한, 사용자 요청을 대기 시간 없이 처리중인 작업과 동시에 데이타베이스의 검색을 위한 디스크 접근을 공유하여 시스템 처리율을 높이고 빠른 응답시간을 가지는 카플 방식을 제안한다. 제안된 기법은 수학적 분석과 시뮬레이션을 통하여 성능을 검증하였다. Most programs of bioinformatics provide biochemists and biologists retrieve and analysis services of gene and protein database. As these services retrieve database for each arrival of user's request, it takes a long time and increases server's load and response time. In this paper, by utilizing database retrieval patterns of sequence alignment programs in bioinformatics, grouping method is proposed to share database retrieval between many requests. Carpool method is also proposed to reduce response time as well as to increase system expandability by combining new arriving requests with the previous on going requests. The performance of our two proposed schemes is verified by mathematic analysis and simulation.
유방암에서 Claudin-1과 ZO-1 단백 발현 감소와 임상-병리학적 인자와의 연관성
김민준(Min Joon Kim),차성재(Seong Jae Cha),박성일(Sung Il Park),박성준(Sung Jun Park),장인택(In Taik Chang),김범규(Beom Gyu Kim),최유신(Yoo Shin Choi),이태진(Tae Jin Lee) 대한외과학회 2007 Annals of Surgical Treatment and Research(ASRT) Vol.72 No.6
Purpose: Tight junction proteins are either over-expressed or suppressed in some cancers. These suppressions of claudin-1 and ZO-1 protein are known to have a significant relationship with the progression of breast cancer. The authors reviewed 42 cases of breast cancer and the staining status of claudin-1 and ZO-1 in order to evaluate Claudin-1 and ZO-1 as clinicopathologic risk factors. Methods: Immunohistological staining for Claudin-1 and ZO-1 was performed in 42 post-operative pathologically diagnosed infiltrating duct carcinoma specimens. The rate of expression was compared with the clinical record, the pathological diagnosis, the estrogen receptor and progesteron receptor status and the c-erbB2 gene to evaluate the protein expression-breast cancer progression relationship and to investigate the expressions of Claudin-1 and ZO-1 as a prognostic factors in breast cancer. Results: The claudin-1 and ZO-1 expressions were both decreased in all the post-operative specimens. The claudin-1 expressions were significantly decreased 100%, 82.4% and 66.7% as the histologic grade increased. The ZO-1 expressions were shown in 44.8% of the lymph node metastasis negative group and in 7.7% of the lymph node positive group. The expression of ZO-1 decreased by 53.3%, 28.6% and 0%, with statistical significance, as the stage increased. Conclusion: The claudin-1 expressions were decreased in the poorly differentiated group, i.e., a high histologic grade, and the ZO-1 expressions were decreased in the lymph node positive group and in the high stage cancer. This shows the possibility of Claudin-1 and ZO-1 as factors for tumorigenesis and progression and as prognostic factors in breast cancer.
LPS로 유도한 RAW 264.7 세포의 염증반응에서 흰민들레의 항염증 효과
김민준 ( Min Jun Kim ),배기상 ( Gi Sang Bae ),최선복 ( Sun Bok Choi ),조일주 ( Il Joo Jo ),김동구 ( Dong Goo Kim ),신준연 ( Joon Yeon Shin ),이성곤 ( Sung Kon Lee ),김명진 ( Myoung Jin Kim ),박성주 ( Sung Joo Park ),송호준 ( Ho Jo 대한본초학회 2014 大韓本草學會誌 Vol.29 No.6
Objectives : Taraxacum coreanum (TC) have been used as a traditional medicine to treat inflammatory diseases and anti-oxidant effect in Korea. However, the anti-inflammatory effect of TC water extract on lipopolysaccharide (LPS)-induced inflammation is not well-known. Therefore, this study was performed to identify the anti-inflammatory effect of TC on LPS induced inflammatory. Methods : RAW 264.7 cells were treated with 500 ng/mL of LPS. Water extracts of TC (0.1, 0.25, 0.5 mg/ml) was treated 1 h prior to LPS. Cell viability was measured by MTT assay. Levels of nitric oxide (NO) were measured with Griess reagent and pro-inflammatory cytokines were measured by enzyme-linked immunosorbent assay (ELISA) and real-time polymerase chain reaction (real-time PCR). We also examined molecular mechanisms such as mitogen-activated protein kinases (MAPKs) and nuclear factor-B (NF-κB) activation by western blot. Results : Water Extract from TC itself did not have any cytotoxic effect in RAW 264.7 cells. TC treatment inhibited the production of NO production, and pro-inflamamtory cytokines such as interleukin (IL)-6 and IL-1β on protein and mRNA levels. In addition, TC treatment inhibited the LPS-induced activation of MAPKs such as extracellular signal-regulated kinase1/2 (ERK1/2), p38 kinases (p38), c-Jun NH2-terminal kinase (JNK) and NF-κB. Conclusions : In summary, our result suggest that treatment of TC could reduce the LPS-induced inflammation. Thereby, TC could be used as a protective agent against inflammation. Also, this study could give a clinical basis that TC could be a drug or agent to prevent inflammation.
포스터 세션 : 원자재 절감을 고려한 고강도 강재의 횡구속 효과
김민준 ( Min Jun Kim ),김도진 ( Do Jin Kim ),김영식 ( Young Sik Kim ),김상우 ( Sang Woo Kim ),백승철 ( Seung Cheol Baek ),김길희 ( Kil Hee Kim ) 한국감성과학회 2009 추계학술대회 Vol.2009 No.-
강재의 고강도화는 원자재 부족을 해결할 수 있는 방안으로 친환경적이며 인간의 문명을 지속가능하게 하는 방법으로 인식 되고 있다. 따라서 본 연구에서는 고강도 강재의 횡구속 능력을 평가하기 위해 나선철근을 사용한 횡구속실험을 수행하였다. 실험의 주변수는 단면형상, 철근비로 하고 콘크리트의 강도는 25MPa로 계획하였다. 실험 결과, 단면형상에 따라 원형 실험체가 각형 실험체보다 우수한 횡구속 효과를 나타내는 것을 확인하였다. 또한 횡보강근의 철근비가 증가할수록 횡구속 효과가 증가하는 경향을 나타내었다.