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RISS 인기검색어
- 검색키워드
- 저자 : Gila Jung (검색결과 5 건)
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A Phylogenetic Study of Korean Rodents (Muridae, Sciuridae) Based on Mitochondrial and Nuclear DNA
Gila Jung,Seo-Jin Lee,Chuel-kyu Kim,Hang Lee,Chang-Bae Kim 한국동물분류학회 2010 Animal Systematics, Evolution and Diversity Vol.26 No.2
The subfamily Murinae is a very controversial group concerning their phylogenetic relationship. Previous studies could not resolve phylogeny among four genera Apodemus, Micromys, Mus and Rattus of the Muridae. In the present study, eight rodent species resident in South Korea were collected and phylogenetically analyzed based on sequence data of five mitochondrial and nuclear DNA regions: 12S rRNA, cytochrome b gene (cyt b), cytochrome oxidase II (COII), control region of mitochondrial DNA, and a thyroglobulin (Tg) of nuclear DNA. According to the phylogeny of the concatenated data, M. musculus separated early in Murinae (ML 100%; BA 1.00 pp) and the genus Rattus grouped with the harvest mouse, M. minutes; these were separated from the genus Apodemus with relatively strong support (ML 74%; BA 0.76 pp). The Siberian chipmunk population was also examined using the five genes to obtain better resolution. The phylogeny for Korean rodents determined using the 12S rRNA, cyt b, COII and control regions discriminated the Siberian chipmunk populations from Korea, Russia, and China.
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Jung, Gila,Choi, Hee-Jung,Pae, Sejin,Lee, Youn-Ho Informa Healthcare 2013 Mitochondrial DNA Vol.24 No.5
<P>The complete nucleotide of mitochondrial DNA of a sea urchin <I>Mesocentrotus nudus</I> was determined for the first time. It is 15,709 bp in length, containing 2 rRNA, 22 tRNA and 13 protein-coding genes generally found in other echinoderm species. The gene order and structure of the genome are identical to those of other Strongylocentrotidae species. The genome was composed of 29.3% A, 23.4% C, 29.5% T and 17.8% G, showing a slight AT bias (58.8%). The G is the least used base and markedly lower at the third codon position (12.74%). Twelve of the 13 mitochondrial protein-coding genes use ATG as their start codon while the <I>ATP8</I> gene starts with GTG. The control region is 125 bp in length and contains a G-stretch of 19 nucleotides, a typical DNA structure of the echinoid mitochondrial genomes.</P>
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Cho, Hong-Yeon,Kim, Sung,Lee, Youn-Ho,Jung, Gila,Kim, Choong-Gon,Jeong, Dageum,Lee, Yucheol,Kang, Mee-Hye,Kim, Hana,Choi, Hae-Young,Oh, Jina,Myong, Jung-Goo,Choi, Hee-Jung Korea Institute of Ocean ScienceTechnology 2017 Ocean and Polar Research Vol.39 No.1
Temporal changes in the number of zooplankton species are important information for understanding basic characteristics and species diversity in marine ecosystems. The aim of the present study was to estimate the optimal monitoring frequency (OMF) to guarantee and predict the minimum number of species occurrences for studies concerning marine ecosystems. The OMF is estimated using the temporal number of zooplankton species through bi-weekly monitoring of zooplankton species data according to operational taxonomic units in the Tongyoung coastal sea. The optimal model comprises two terms, a constant (optimal mean) and a cosine function with a one-year period. The confidence interval (CI) range of the model with monitoring frequency was estimated using a bootstrap method. The CI range was used as a reference to estimate the optimal monitoring frequency. In general, the minimum monitoring frequency (numbers per year) directly depends on the target (acceptable) estimation error. When the acceptable error (range of the CI) increases, the monitoring frequency decreases because the large acceptable error signals a rough estimation. If the acceptable error (unit: number value) of the number of the zooplankton species is set to 3, the minimum monitoring frequency (times per year) is 24. The residual distribution of the model followed a normal distribution. This model can be applied for the estimation of the minimal monitoring frequency that satisfies the target error bounds, as this model provides an estimation of the error of the zooplankton species numbers with monitoring frequencies.
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Molecular Taxonomy of a Phantom Midge Species (Chaoborus flavicans) in Korea
Haein An,Gila Jung,Chang-Bae Kim 한국동물분류학회 2012 Animal Systematics, Evolution and Diversity Vol.28 No.1
The larvae of Chaoborus are widely distributed in lakes, ponds, and reservoirs. These omnivorous Chaoborus larvae are crucial predators and play a role in structuring zooplankton communities, especially for small-sized prey. Larvae of Chaoborus are commonly known to produce predator-induced polyphenism in Daphnia sp. Nevertheless, their taxonomy and molecular phylogeny are very poorly understood. As a fundamental study for understanding the role of Chaoborus in predator-prey interactions in a freshwater ecosystem, the molecular identification and phylogenetic relationship of Chaoborus were analyzed in this study. A molecular comparison based on partial mitochondrial cytochrome oxidase Ⅰ(COⅠ) between species in Chaoborus was carried out for the identification of Chaoborus larvae collected from 2 localities in Korea. According to the results, the Chaoborus species examined here was identified as C. flavicans, which is a lake-dwelling species. Furthermore, partial mitochondrial genome including COⅠ, COⅡ, ATP6, ATP8, COⅢ, and ND3 were also newly sequenced from the species and concatenated 5 gene sequences excluding ATP8 with another 9 dipteran species were compared to examine phylogenetic relationships of C. flavicans. The results suggested that Chaoborus was more related to the Ceratopogonidae than to the Culicidae. Further analysis based on complete mitochondrial DNA sequences and nuclear gene sequences will provide a more robust validation of the phylogenetic relationships of Chaoborus within dipteran lineages.
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Regioregularity-Driven Morphological Transition of Poly(3-hexylthiophene)-Based Block Copolymers
Kim, Jin-Seong,Kim, Yongjoo,Kim, Hyun-Jeong,Kim, Hyeong Jun,Yang, Hyunseung,Jung, Yeon Sik,Stein, Gila E.,Kim, Bumjoon J. American Chemical Society 2017 Macromolecules Vol.50 No.5
<P>Conjugated polymer-based block copolymers (BCPs) offer great potential to provide beneficial nanostructures for efficient organic optoelectronics. However, their complicated self-assembly behavior, which is attributed to the strong crystallization of conjugated blocks, is still not well understood due to the lack of a model BCP system. Herein, we develop a series of novel conjugated polymer-based BCPs, poly(3-hexylthiophene)-block-poly(2-vinylpyridine) (P3HT-b-P2VP), in which the regioregularity (RR) of the P3HT block was varied from 95 to 73%. The tunable RR content allows for precise regulation of P3HT crystallization with minimal influence on the microphase-separation force between the P3HT and P2VP blocks. When RR is high (i.e., 95 or 8S%), structure formation is controlled by crystallization of P3HT, and the ultimate structure is characterized by nanoscale P3HT fibrils in an amorphous matrix. In contrast, as RR decreases to 78 and 73%, P3HT crystallization is suppressed. The self-assembly is controlled by the enthalpic interaction between P3HT and P2VP blocks, much like typical BCPs having two flexible blocks, and thermal annealing drives the formation of well-ordered lamellar or cylindrical phases. This morphological behavior is consistent with a Monte Carlo simulation based on a newly developed coarse-grained model. Significantly, this novel class of RR-controlled P3HT-based BCPs provides a simple method to tune bulk and thin film morphology for a variety of applications in nanostructured organic electronics.</P>
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