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Molecular Cloning and Bioinformatic Analysis of SPATA4 Gene
Liu, Shang-Feng,Ai, Chao,Ge, Zhong-Qi,Liu, Hai-Luo,Liu, Bo-Wen,He, Shan,Wang, Zhao Korean Society for Biochemistry and Molecular Biol 2005 Journal of biochemistry and molecular biology Vol.38 No.6
Full-length cDNA sequences of four novel SPATA4 genes in chimpanzee, cow, chicken and ascidian were identified by bioinformatic analysis using mouse or human SPATA4 cDNA fragment as electronic probe. All these genes have 6 exons and have similar protein molecular weight and do not localize in sex chromosome. The mouse SPATA4 sequence is identified as significantly changed in cryptorchidism, which shares no significant homology with any known protein in swissprot databases except for the homologous genes in various vertebrates. Our searching results showed that all SPATA4 proteins have a putative conserved domain DUF1042. The percentages of putative SPATA4 protein sequence identity ranging from 30% to 99%. The high similarity was also found in 1 kb promoter regions of human, mouse and rat SPATA4 gene. The similarities of the sequences upstream of SPATA4 promoter also have a high proportion. The results of searching SymAtlas (http://symatlas.gnf.org/SymAtlas/) showed that human SPATA4 has a high expression in testis, especially in testis interstitial, leydig cell, seminiferous tubule and germ cell. Mouse SPATA4 was observed exclusively in adult mouse testis and almost no signal was detected in other tissues. The pI values of the protein are negative, ranging from 9.44 to 10.15. The subcellular location of the protein is usually in the nucleus. And the signal peptide possibilities for SPATA4 are always zero. Using the SNPs data in NCBI, we found 33 SNPs in human SPATA4 gene genomic DNA region, with the distribution of 29 SNPs in the introns. CpG island searching gives the data about CpG island, which shows that the regions of the CpG island have a high similarity with each other, though the length of the CpG island is different from each other.This research is a fundamental work in the fields of the bioinformational analysis, and also put forward a new way for the bioinformatic analysis of other genes.
Yan Shang,Linshan Wang,Changsheng Liu,Carlos Fernandez,L.Rajendran,M. Kirthiga,Yuhong Wang,Dun Niu,Dongdong Liu 한국정밀공학회 2017 International Journal of Precision Engineering and Vol.18 No.1
We present for the first time the analysis and fabrication of a novel Tin-Nickel mixed salt electrolytic coloured processing and the performance of coloured films for Al-12.7Si-0.7Mg alloy. This alloy is a novel alloy containing high silicon aluminum alloy extrusion profile which presents excellent mechanical properties as well as broad market prospects. Nevertheless, this kind of material is urgent in need of surface treatment technology. The orthogonal design and single factor tests were applied to optimize for electrolytic coloured technological conditions. By controlling operation conditions, the uniform electrolytic coloured films with different color were obtained. Analysis of microstructure showed that tin particles had been deposited in the coloured film. The coloured films, about 10 μm thick, were uniform, dense and firmly attached to the substrate. After the coloured samples were maintained at 400ºC for 1 h, or quenched from 300ºC to room temperature, the coloured films did not change, demonstrating excellent thermostability and thermal shock resistance. Acid and alkali corrosion tests and potentiodynamic polarization showed that corrosion resistance of coloured sample was much better than those of untreated samples. After 240 h neutral salt spray test, protection ratings and appearance ratings of coloured films were Grade 9.
Mao Jianxin,Wang Di,Wang Dong,Wu Qi,Shang Qiliang,Gao Chu,Wang Huanbo,Wang Han,Du Mu,Peng Pandi,Jia Haoruo,Xu Xiaolong,Wang Jie,Yang Liu,Luo Zhuojing 생화학분자생물학회 2023 Experimental and molecular medicine Vol.55 No.-
Mitochondrial dysfunction plays a major role in the development of intervertebral disc degeneration (IDD). Sirtuin 5 (SIRT5) participates in the maintenance of mitochondrial homeostasis through its desuccinylase activity. However, it is still unclear whether succinylation or SIRT5 is involved in the impairment of mitochondria and development of IDD induced by excessive mechanical stress. Our 4D label-free quantitative proteomic results showed decreased expression of the desuccinylase SIRT5 in rat nucleus pulposus (NP) tissues under mechanical loading. Overexpression of Sirt5 effectively alleviated, whereas knockdown of Sirt5 aggravated, the apoptosis and dysfunction of NP cells under mechanical stress, consistent with the more severe IDD phenotype of Sirt5 KO mice than wild-type mice that underwent lumbar spine instability (LSI) surgery. Moreover, immunoprecipitation-coupled mass spectrometry (IP-MS) results suggested that AIFM1 was a downstream target of SIRT5, which was verified by a Co-IP assay. We further demonstrated that reduced SIRT5 expression resulted in the increased succinylation of AIFM1, which in turn abolished the interaction between AIFM1 and CHCHD4 and thus led to the reduced electron transfer chain (ETC) complex subunits in NP cells. Reduced ETC complex subunits resulted in mitochondrial dysfunction and the subsequent occurrence of IDD under mechanical stress. Finally, we validated the efficacy of treatments targeting disrupted mitochondrial protein importation by upregulating SIRT5 expression or methylene blue (MB) administration in the compression-induced rat IDD model. In conclusion, our study provides new insights into the occurrence and development of IDD and offers promising therapeutic approaches for IDD.
Liu, Hang,He, Ping,Wang, Juntao,Wang, Dan,Shang, Jianli Optical Society of Korea 2022 Current Optics and Photonics Vol.6 No.5
To account for the internal thermal effects of solid-state lasers, a method using a back propagation (BP) neural network integrated with a particle swarm optimization (PSO) algorithm is developed, which is a new wavefront distortion correction technique. In particular, by using a slab laser model, a series of fiber pumped sources are employed to form a controlled array to pump the gain medium, allowing the internal temperature field of the gain medium to be designed by altering the power of each pump source. Furthermore, the BP artificial neural network is employed to construct a nonlinear mapping relationship between the power matrix of the pump array and the thermally induced wavefront aberration. Lastly, the suppression of thermally induced wavefront distortion can be achieved by changing the power matrix of the pump array and obtaining the optimal pump light intensity distribution combined using the PSO algorithm. The minimal beam quality β can be obtained by optimally distributing the pumping light. Compared with the method of designing uniform pumping light into the gain medium, the theoretically computed single pass beam quality β value is optimized from 5.34 to 1.28. In this numerical analysis, experiments are conducted to validate the relationship between the thermally generated wavefront and certain pumping light distributions.
Analysis and Prediction of Structural Plane Connectivity in Tunnel based on Digitalizing Image
Shang-qu Sun,Li-Ping Li,Jing Wang,Hong-liang Liu,Zhongdong Fang,Xingzhi Ba 대한토목학회 2019 KSCE JOURNAL OF CIVIL ENGINEERING Vol.23 No.6
The identification of structural plane connectivity is an application problem in rock mass engineering. Theoretically, information of exposed rock mass and its internal borehole is of great significance to predict network of unexcavated rock structural plane, especially in tunnel engineering. In this paper, parameters of structural planes have been obtained through borehole imaging in advance drilling borehole of tunnel face. Furthermore, a geometric discrimination method for the multiple structural plane based on the included angle has been proposed. And then, spatial distribution of the large scale structural plane in the unexcavated rock mass has been recognized by effective assistant techniques. To verify this method, the binocular photogrammetry method has been adopted to investigate the parameters of structural planes during excavation, and then the structural plane model of tunnel face has been constructed. The tunnel face mapping has been compared with that of section of the predicted model. The results showed that included angle identification method based on three boreholes is highly reliable and can be used to accurately construct the deterministic structural plane network in front of the tunnel face.
Glucocorticoid-induced expansion of classical monocytes contributes to bone loss
Liu Pei,Gao Youshui,Luo Pengbo,Yu Hongping,Guo Shang,Liu Fuyun,Gao Junjie,Xu Jianzhong,Wang Shengdian,Zhang Changqing 생화학분자생물학회 2022 Experimental and molecular medicine Vol.54 No.-
Classical monocytes are commonly involved in the innate inflammatory response and are the progenitors of osteoclasts. Excess endogenous glucocorticoids (GCs) can increase the levels of classical monocytes in blood and bone marrow. The role of this cell population in high-dose exogenous GC-induced osteoporosis (GIOP) remains to be elucidated. In this study, GIOP was established in rats and mice by daily methylprednisolone injection, and monocyte subsets were analyzed by flow cytometry. We demonstrated that classical monocytes accumulate in bone marrow during GIOP. Similarly, the monocyte proportion among bone marrow nucleated cells was also increased in patients with steroid treatment history. We sorted classical monocytes and analyzed their transcriptional profile in response to GCs by RNA sequencing. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis showed that classical monocytes isolated from GC-treated rats exhibited osteoclast differentiation potential. Deletion of classical monocytes by clodronate liposome treatment prevented GIOP via inhibition of osteoclastogenesis and restoration of CD31HiendomucinHi vessels. Regarding the molecular mechanism, classical monocytes express high levels of glucocorticoid receptors. In vitro treatment with GCs increased both the percentage and absolute number of monocytes and promoted their proliferation. In summary, classical monocytes mediated GC-induced bone loss and are a potential target for therapeutic intervention in GIOP treatment.
Flexible Cu2O/Cu film self-powered photodetector for high visible light selection and fast response
Liu Yonghao,Zhao Dawei,Sun Ximing,Cui Feng,Zhang Shan,Shang Xue,Xuan Zhen,Xiao Juqing,Wang Jiapeng,Ren Yandong 한국물리학회 2024 Current Applied Physics Vol.58 No.-
Spectral selection is one of the key performance parameters for visible light photodetectors (VLPD). However, as the absorbing layer of the VLPD, the semiconductor has strong ultraviolet light absorption, leading to poor visible light selectivity of the VLPD. This work fabricated a flexible photovoltaic VLPD based on Cu2O/Cu Schottky junction by annealing Cu foil. Under zero bias, the Cu2O/Cu VLPD showed the responsivity of 14 mA/W, the response time of 1 ms, and the detectivity of 8.8 × 1011 Jones to 620 nm light. Moreover, the detection band of the device is in the range of 500–640 nm, indicating excellent visible light selectivity. Optical and electrical characterization shows that the high visible selectivity of the device is mainly attributed to the fact that the penetration depth of visible light in Cu2O film matches the position of the Cu2O/Cu Schottky junction. This, in turn, induces the effective separation of the photogenerated carriers excited by the visible light. In addition, the bend detection performance of the device is demonstrated. This work provides a reference for improving the spectral selectivity of visible photodetectors.