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이한님(Han Nim Lee),정태준(Taijoon Chung) 한국생명과학회 2014 생명과학회지 Vol.24 No.2
다양한 진핵세포에서 자식작용은 세포질 일부를 격리시켜 분해 구획으로 수송하여 대량 분해시킨다. 자식작용은 역동적인 분해 경로이며, 수송하고자 하는 세포질에 대해 다양한 선택성을 갖고 있고, 그 활성의 조절은 영양상태와 발생 단계에 의존적이다. 최근 자식작용 연구가 많은 관심을 받고 있는데, 이는 자식작용이 흥미로운 세포학적 현상이기 때문이기도 하지만, 자식작용이 가지는 의학적, 농학적 응용 가능성 때문이기도 하다. 이를 테면, 자식작용은 암이나 퇴행성 신경질환과 연관성이 있으며 식물의 잎 노화 중에 일어나는 영양분의 재이동에도 관여하는 것으로 보인다. 본 리뷰에서는 효모, 동물 및 식물에서 보존된 핵심적 자식작용 장치의 유전학적 성분을 기술한 후, 이들 성분이 식물 자식작용의 각 단계에 필요한지 간단히 설명할 것이다. 또한 우리는 자식작용의 네 가지 공통 특성, 즉 (i) 분해 과정으로서의 자식작용, (ii) 자식작용 연구에서 유동성 개념, (iii) 발생학적 및 영양분의 신호에 대한 의존성, (iv) 선택적 자식작용에 초점을 맞춘 자식작용의 다양성에 대해 논의할 것이다. 또한 식물 자식작용의 세포학적, 생리학적 기능을 요약할 것이다. 이와 같은 논의를 통해 자식작용 연구에 대한 초보적 안내서를 제공하고자 한다. In a variety of eukaryotic cells, autophagy sequesters a portion of the cytoplasm and targets it to a lytic compartment for degradation in bulk. Autophagy is a dynamic process for degrading cytoplasmic cargoes with various degrees of selectivity, and its activity is tightly regulated in a nutrient- and development-dependent manner. Autophagy research has drawn much attention since autophagy not only is an interesting cell biological phenomenon but also has great potential for medical and agricultural applications. For example, autophagy is associated with cancers and neurodegenerative diseases in human and mammalian cells and is also suggested in remobilization of nutrients during the senescence of plant leaves. In this general review, we describe genetic components of the core autophagic machinery conserved among yeast, animals, and plants and briefly explain how these components are responsible for major steps in plant autophagy. We discuss four common features of autophagic processes: (i) autophagy as a degradation pathway, (ii) the concept of flux in autophagy research, (iii) dependency on developmental and nutritional cues, and (iv) diversity of autophagy, focusing on selective types of autophagy. We also summarize cell biological and physiological functions of plant autophagy. Our intention is to provide a quick guide to autophagy for those who are new to autophagy research.
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신광덕,이한님,정태준 한국분자세포생물학회 2014 Molecules and cells Vol.37 No.5
Autophagy targets cytoplasmic cargo to a lytic compartment for degradation. Autophagy-related (Atg) proteins, including the transmembrane protein Atg9, are involved in different steps of autophagy in yeast and mammalian cells. Functional classification of core Atg proteins in plants has not been clearly confirmed, partly because of the limited availability of reliable assays for monitoring autophagic flux. By using proUBQ10-GFP-ATG8a as an autophagic marker, we showed that autophagic flux is reduced but not completely compromised in Arabidopsis thaliana atg9 mutants. In contrast, we confirmed full inhibition of autophagic flux in atg7 and that the difference in autophagy was consistent with the differences in mutant phenotypes such as hypersensitivity to nutrient stress and selective autophagy. Autophagic flux is also reduced by an inhibitor of phosphatidylinositol kinase. Our data indicated that atg9 is phenotypically distinct from atg7 and atg2 in Arabidopsis, and we proposed that ATG9 and phosphatidylinositol kinase activity contribute to efficient autophagy in Arabidopsis.
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Autophagic flux analysis of Arabidopsis seedlings exposed to salt stress
정혜라,김정훈,신광덕,김지미,이한님,정태준 한국식물학회 2017 Journal of Plant Biology Vol.60 No.2
In plant cells, autophagy is required for efficient recycling of cytoplasmic macromolecules in vacuoles. It was previously shown that autophagy-deficient mutants also exhibited hypersensitivity to various abiotic stresses, such as salt, osmotic changes, heat, drought, and oxidative damage. However, it has not been clearly determined whether autophagy is induced or inhibited by these environmental stressors. Using the GFP-ATG8 (green fluorescent protein fused to AUTOPHAGY-RELATED PROTEIN 8) processing assay and confocal microscopy, we assessed autophagic flux of Arabidopsis seedlings exposed to salt stress. Treatment with 150 mM NaCl resulted in an increase in the processing of GFP-ATG8. Notably, the effects of concanamycin A, an inhibitor of vacuolar proton pumps, on GFP-ATG8 processing indicated that the apparent increase in GFP-ATG8 processing by salt-induced stress was due to inefficient vacuolar degradation of the GFP moiety processed from GFP-ATG8. Salt and osmotic stresses did not increase the abundance of autophagic vesicles in the root cells. Although NaCl, KCl, and mannitol did not greatly inhibit the vacuolar trafficking of GFP-ATG8, LiCl partially inhibited autophagy. These data indicated that NaCl stress neither increases nor substantially inhibits autophagic flux. Our work illustrates the importance of autophagic flux analysis to assess the effect of abiotic stresses on plant autophagy.
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