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김안드레,박장수 한국분자세포생물학회 2002 Molecules and cells Vol.13 No.3
The eukaryotic replication protein A (RPA) is a heterotrimeric protein complex. It consists of 70, 32, and 14 kDa subunits that are involved in DNA replication, repair, and genetic recombination. RPA is a 4-cysteine type zinc-finger protein. RPA’s zinc-finger domain is not essential for DNA binding activity, but it is involved in the regulation of RPA’s DNA binding activity through reduction-oxidation (redox). In this study, we show that yeast RPA’s ssDNA binding activity is regulated by redox potential through its subcomplexes of 32 and 14 kDa subunits. In contrast, the subunits’ complex, RPA70, formed a stable complex with ssDNA, even under non-reducing conditions. The addition of DTT and H2O2 had no effect on its DNA binding activity. In RPA70, since the addition of the subcomplexes of the 32 and 14 kDa subunits, it restored the modulating ssDNA binding activity to native RPA’s DNA binding activity. These results suggest that the subcomplexes of the 32 and 14 kDa subunits may be involved in the modulating RPA’s DNA binding activity through redox change. These studies, therefore, show the novel structure and function relationship of a multiprotein complex in that the role of a specific domain (or one subunit) is regulated by the other subunits.
2D NMR Probe Development for Investigation of Biosupramolecular Systems
김안드레,강신원,박장수 한국자기공명학회 2004 Journal of the Korean Magnetic Resonance Society Vol.8 No.1
Biosupramolecular systems such as biological membranes usually fluid under physiological conditions1. Therefore, solid-state NMR has been used to investigate biosupramolecular systems. But solid-state NMR spectra contain a large number of overlapping resonances and are rather difficult to analyze. These problem has to be overcome by selective isotope labeling. We constructed a deuterium NMR probe for AM400 NMR spectrometer, which is mainly used for liquid samples. To overcome the fluidity problem, a saddle type coil was designed. The efficiency was systematically investigated for two kinds of coil geometry, solenoid and saddle types. Our results suggest that solenoids are superior to saddle type coils in the sensitivity. However, the letter fits better to fluid samples such as biosupramolecular systems 영어논문
NMR Studies on Ferricytochrome c3 and its Interaction with Ferredoxin I
김안드레,박장수 한국자기공명학회 1999 Journal of the Korean Magnetic Resonance Society Vol.3 No.1
The 1H NMR signals of the heme methyl, propionate and related chemical groups of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F (D.v. MF) were assigned by means of 1D NOE, 2D DQFCOSY and 2D TOCSY spectra. They were consistent with the assignments of the hemes with the highest and second-lowest redox potentials reported by Gayda et al. [Reference: 15]. The heme assignments were also supported by NOE between the methyl groups of these hemes and the side chain of Val-18, All the results contradicted the heme assignments for D.v. MF cytochrome c3 made on the basis of NMR [Reference: 11]. Based on these assignments, the interaction of cytochrome c3 with ferredoxin I was investigated by NMR. The major interaction site of cytochrome c3 was identified as the heme with the highest redox potential, which is surrounded by the highest density of positive charges. The stoichiometry and association constant were two cytochrome c3 molecules per monomer of ferredoxin I and 108 M-2 (at 53 mM ionic strength and 25 oC), respectively. 영어논문
Nitrogen Isotope Labeled Tetraheme Cytochrome c3 on a Defined Medium
김안드레,Jang-Su Park* 대한화학회 2005 Bulletin of the Korean Chemical Society Vol.26 No.2
To obtain cytochrome c3 labeled with a stable isotope, the conditions of cultivation and the composition of medium for DvMF were examined. The growth of DvMF was steady and reproducible under purging with N2 and under pH control. DvMF was able to go on a defined medium without natural products. The composition of medium containing a small amount of NH4Cl as sole nitrogen source was established. Then, uniformly 15N-labeled cytochrome c3 was obtained during the culture of DvMF in a defined medium with 15NH4Cl; it was confirmed by 1H-15N HMQC.
Li, Chun-Ri,Kim, Kwang-Tae,Kim, Andre,Chung, Kyu-Hyuck,Kim, Dong-Kyoo,Kang, Shin-Won,Park, Jang-Su 한국환경독성학회 2004 환경독성보건학회지 Vol.19 No.4
난황단백질인 비탈로세닌을 성숙한 암컷 붕어 혈청으로부터 음이온 교환 크로마토그래피를 이용하여 정제 하였다 정제한 비탈로제닌을 BALB/c mice를 이용하여 폴리크로날 항체를 생산하였고 이를 protein A column을 사용하여 정제하였다 또한 이렇게 정제된 폴리크로날 항체를 이용한 붕어 비탈로제닌 측정용 효소면역측정법을 개발하였으며 그 측정 범위는 2~1,000ng/mL이고 recovery 변동 범위는 88~112%였다 또한 이 효소면역측정법을 평가하기 위해 성숙한 수컷 붕어를 1,000ng/L ethinylestradiol(EE₂)에 4주 동안 노출시켜 유도되어지는 비텔로제닌을 측정하였다 그 결과 성숙한 수컷 붕어의 경우 비탈로제닌이 3주 만에 암컷 붕어의 평균수치만큼 유도됨을 알 수 있었다.
한천분해 Agarivorans sp. HY-1의 분리와 한천분해효소의 특성
이동근,조하연,김안드레,이상현 한국생명과학회 2022 생명과학회지 Vol.32 No.4
In this study, the growth characteristics of an agar-degrading bacterium isolated from seawater samples collected from Yeongheungdo, Incheon, and the characteristics of its agarase were analyzed. The 16S rRNA gene sequence of the isolated strain was 95% similar to that of the genus Agarivorans, and thus the isolated strain was named Agarivorans sp. HY-1. When Agarivorans sp. HY-1 was cultured in a marine broth 2216 medium at 27℃ and 250 rpm, it showed maximum growth on day 1 and showed maximum enzymatic activity on day 2. A crude enzyme solution was prepared from secreted agarase in the culture medium. The extracellular agarase of the Agarivorans sp. HY-1 strain showed maximal activity at 40℃ and pH 7.0 (20 mM Tris-HCl) with 591.91 U/l. The agarase exhibited relative activities of 64, 91, 100, 97, 89, and 60% at 20, 30, 40, 50, 60, and 70℃, respectively. At pH 5, 6, 7, and 8, the relative activities were 79, 95, 100, and 55%, respectively. Furthermore, the agarase exhibited >86% residual activity at 20, 30, and 40℃ for 2 hr and >44% residual activity at 50℃ after 2 hr. A TLC analysis confirmed that Agarivorans sp. HY-1 produced α-agarase. As the degradation products of α-agarase have anticancer and antioxidant effects, Agarivorans sp. HY-1 and its agarase may well prove useful. 본 연구에서는 인천시 영흥도에서 채취한 해수시료에서 분리한 한천분해세균의 생육특성과 균주가 생산하는 agarase 특성을 분석하였다. 분리된 균주의 16S rRNA 유전자 염기서열은 Agarivorans 속 세균과 95% 유사하여, 분리된 균주를 Agarivorans sp. HY-1으로 명명하였다. Agarivorans sp. HY-1을 Marine broth 2216 배지에서 27℃, 250 rpm 조건으로 배양하니 생장은 1일차에, 효소활성은 2일차에 최대를 보였다. 조효소액은 균주 배양액에서 세포외로 분비되는 agarase로 준비하였다. Agarivorans sp. HY-1균주의 세포외 agarase는 40℃와 pH 7.0 (20 mM Tris- HCl)에서 최대의 활성을 보였다. 한천분해효소는 20, 30, 40, 50, 60 및 70℃에서 각 64, 91, 100, 97, 89 및 60%의 상대활성을 나타냈으며, pH 5, 6, 7 및 8에서는 79, 95, 100 및 55%의 활성을 나타냈다. 이 agarase는 20, 30, 40℃에서 2시간 열처리를 하였을 때 86% 이상의 잔존활성을 보였으며 50℃에서는 2시간 후 44% 이상의 잔존활성을 보였다. TLC 분석 결과, Agarivorans sp. HY-1는 α-agarase를 생산하는 것이 확인되었다. α-Agarase의 분해산물은 항암 활성 및 항산화 효과를 지니고 있으므로, Agarivorans sp. HY-1 균주와 agarase는 유용하게 이용할 수 있을 것으로 기대된다.