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      Three-Dimensional Approaches in Histopathological Tissue Clearing System

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      https://www.riss.kr/link?id=A106639506

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      다국어 초록 (Multilingual Abstract)

      Three-dimensional microscopic approaches in histopathology display multiplex properties that present puzzling questions for specimens as related to their comprehensive volumetric information. This information includes spatial distribution of molecules, three-dimensional co-localization, structural formation and whole data set that cannot be determined by two-dimensional section slides due to the inevitable loss of spatial information. Advancement of optical instruments such as two-photon microscopy and high performance objectives with motorized correction collars have narrowed the gap between optical theories and the actual reality of deep tissue imaging. However, the benefits gained by a prolonged working distance, two-photon laser and optimized beam alignment are inevitably diminished because of the light scattering phenomenon that is deeply related to the refractive index mismatch between each cellular component and the surrounding medium. From the first approaches with simple crude refractive index matching techniques to the recent cutting-edge integrated tissue clearing methods, an achievement of transparency without morphological denaturation and eradication of natural and fixation-induced nonspecific autofluorescence out of real signal are key factors to determine the perfection of tissue clearing and the immunofluorescent staining for high contrast images. When performing integrated laboratory workflow of tissue for processing frozen and formalin-fixed tissues, clear lipid-exchanged acrylamide-hybridized rigid imaging/immunostaining/in situ hybridization-compatible tissue hydrogel (CLARITY), an equipment-based tissue clearing method, is compatible with routine procedures in a histopathology laboratory.
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      Three-dimensional microscopic approaches in histopathology display multiplex properties that present puzzling questions for specimens as related to their comprehensive volumetric information. This information includes spatial distribution of molecules...

      Three-dimensional microscopic approaches in histopathology display multiplex properties that present puzzling questions for specimens as related to their comprehensive volumetric information. This information includes spatial distribution of molecules, three-dimensional co-localization, structural formation and whole data set that cannot be determined by two-dimensional section slides due to the inevitable loss of spatial information. Advancement of optical instruments such as two-photon microscopy and high performance objectives with motorized correction collars have narrowed the gap between optical theories and the actual reality of deep tissue imaging. However, the benefits gained by a prolonged working distance, two-photon laser and optimized beam alignment are inevitably diminished because of the light scattering phenomenon that is deeply related to the refractive index mismatch between each cellular component and the surrounding medium. From the first approaches with simple crude refractive index matching techniques to the recent cutting-edge integrated tissue clearing methods, an achievement of transparency without morphological denaturation and eradication of natural and fixation-induced nonspecific autofluorescence out of real signal are key factors to determine the perfection of tissue clearing and the immunofluorescent staining for high contrast images. When performing integrated laboratory workflow of tissue for processing frozen and formalin-fixed tissues, clear lipid-exchanged acrylamide-hybridized rigid imaging/immunostaining/in situ hybridization-compatible tissue hydrogel (CLARITY), an equipment-based tissue clearing method, is compatible with routine procedures in a histopathology laboratory.

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      참고문헌 (Reference)

      1 Nicolas Renier, "iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging" Elsevier BV 159 (159): 896-910, 2014

      2 Liron Pantanowitz, "Whole slide imaging in pathology: advantages, limitations, and emerging perspectives" Informa UK Limited 7 : 23-33, 2015

      3 Martin L Katz, "What is lipofuscin? Defining characteristics and differentiation from other autofluorescent lysosomal storage bodies" Elsevier BV 34 (34): 169-184, 2002

      4 Phillip B. Jones, "Two postprocessing techniques for the elimination of background autofluorescence for fluorescence lifetime imaging microscopy" SPIE-Intl Soc Optical Eng 13 (13): 014008-, 2008

      5 Girish K. Srivastava, "Trypan Blue staining method for quenching the autofluorescence of RPE cells for improving protein expression analysis" Elsevier BV 93 (93): 956-962, 2011

      6 Michael Eisenstein, "Transparent tissues bring cells into focus for microscopy" Springer Science and Business Media LLC 564 (564): 147-149, 2018

      7 Ali Ertürk, "Three-dimensional imaging of solvent-cleared organs using 3DISCO" Springer Science and Business Media LLC 7 (7): 1983-1995, 2012

      8 Izabela M. Zakiewicz, "Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex" Public Library of Science (PLoS) 10 (10): e0137571-, 2015

      9 Andrea Babic, "The impact of pre-analytical processing on staining quality for H&E, dual hapten, dual color in situ hybridization and fluorescent in situ hybridization assays" Elsevier BV 52 (52): 287-300, 2010

      10 P.A. YOUNG, "The effects of refractive index heterogeneity within kidney tissue on multiphoton fluorescence excitation microscopy" Wiley 242 (242): 148-156, 2011

      1 Nicolas Renier, "iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging" Elsevier BV 159 (159): 896-910, 2014

      2 Liron Pantanowitz, "Whole slide imaging in pathology: advantages, limitations, and emerging perspectives" Informa UK Limited 7 : 23-33, 2015

      3 Martin L Katz, "What is lipofuscin? Defining characteristics and differentiation from other autofluorescent lysosomal storage bodies" Elsevier BV 34 (34): 169-184, 2002

      4 Phillip B. Jones, "Two postprocessing techniques for the elimination of background autofluorescence for fluorescence lifetime imaging microscopy" SPIE-Intl Soc Optical Eng 13 (13): 014008-, 2008

      5 Girish K. Srivastava, "Trypan Blue staining method for quenching the autofluorescence of RPE cells for improving protein expression analysis" Elsevier BV 93 (93): 956-962, 2011

      6 Michael Eisenstein, "Transparent tissues bring cells into focus for microscopy" Springer Science and Business Media LLC 564 (564): 147-149, 2018

      7 Ali Ertürk, "Three-dimensional imaging of solvent-cleared organs using 3DISCO" Springer Science and Business Media LLC 7 (7): 1983-1995, 2012

      8 Izabela M. Zakiewicz, "Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex" Public Library of Science (PLoS) 10 (10): e0137571-, 2015

      9 Andrea Babic, "The impact of pre-analytical processing on staining quality for H&E, dual hapten, dual color in situ hybridization and fluorescent in situ hybridization assays" Elsevier BV 52 (52): 287-300, 2010

      10 P.A. YOUNG, "The effects of refractive index heterogeneity within kidney tissue on multiphoton fluorescence excitation microscopy" Wiley 242 (242): 148-156, 2011

      11 Andrew Filby, "The effect of trypan blue treatment on autofluorescence of fixed cells" Wiley 91 (91): 917-925, 2017

      12 Boualem Hammouda, "Temperature Effect on the Nanostructureof SDS Micelles in Water" National Institute of Standards and Technology (NIST) 118 : 151-167, 2013

      13 Oliveira VC, "Sudan black b treatment reduces autofluorescence and improves resolution of in situ hybridization specific fluorescent signals of brain sections" 25 : 1017-1024, 2010

      14 Yan Sun, "Sudan Black B Reduces Autofluorescence in Murine Renal Tissue" Archives of Pathology and Laboratory Medicine 135 (135): 1335-1342, 2011

      15 Kwanghun Chung, "Structural and molecular interrogation of intact biological systems" Springer Science and Business Media LLC 497 (497): 332-337, 2013

      16 Sung-Yon Kim, "Stochastic electrotransport selectively enhances the transport of highly electromobile molecules" Proceedings of the National Academy of Sciences 112 (112): E6274-E6283, 2015

      17 Alzbeta Marcek Chorvatova, "Spectrally and spatially resolved laser‐induced photobleaching of endogenous flavin fluorescence in cardiac myocytes" Wiley 95 (95): 13-23, 2019

      18 Marmorstein AD, "Spectral profiling of autofluorescence associated with lipofuscin, Bruch’s membrane, and sub-RPE deposits in normal and AMD eyes" 43 : 2435-2441, 2002

      19 D. Chorvat, "Spectral Unmixing of Flavin Autofluorescence Components in Cardiac Myocytes" Elsevier BV 89 (89): L55-L57, 2005

      20 Bin Yang, "Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing" Elsevier BV 158 (158): 945-958, 2014

      21 Ekaterina Poguzhelskaya, "Simplified method to perform CLARITY imaging" Springer Science and Business Media LLC 9 (9): 19-, 2014

      22 Evan Murray, "Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems" Elsevier BV 163 (163): 1500-1514, 2015

      23 Michael Neumann, "Simple Method for Reduction of Autofluorescence in Fluorescence Microscopy" SAGE Publications 50 (50): 437-439, 2016

      24 Wahlby C, "Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei" 47 : 32-41, 2002

      25 Rossetti BJ, "Semi-blind sparse affine spectral unmixing of autofluorescencecontaminated micrographs" pii : btz674-, 2019

      26 Hiroshi Hama, "ScaleS: an optical clearing palette for biological imaging" Springer Science and Business Media LLC 18 (18): 1518-1529, 2015

      27 Thomas L. McMeekin, "Refractive indices of proteins in relation to amino acid composition and specific volume" Elsevier BV 7 (7): 151-156, 1962

      28 Frank P. Bolin, "Refractive index of some mammalian tissues using a fiber optic cladding method" The Optical Society 28 (28): 2297-2303, 1989

      29 B Clancy, "Reduction of background autofluorescence in brain sections following immersion in sodium borohydride" Elsevier BV 83 (83): 97-102, 1998

      30 Kelsey A. Potter, "Reduction of autofluorescence at the microelectrode–cortical tissue interface improves antibody detection" Elsevier BV 203 (203): 96-105, 2012

      31 Stephen A. Schnell, "Reduction of Lipofuscin-like Autofluorescence in Fluorescently Labeled Tissue" SAGE Publications 47 (47): 719-730, 2016

      32 Hei Ming Lai, "Rationalisation and Validation of an Acrylamide-Free Procedure in Three-Dimensional Histological Imaging" Public Library of Science (PLoS) 11 (11): e0158628-, 2016

      33 Masakazu Umezawa, "Rapid increase in transparency of biological organs by matching refractive index of medium to cell membrane using phosphoric acid" Royal Society of Chemistry (RSC) 9 (9): 15269-15276, 2019

      34 SpoorthiBanavar Ravi, "Plastination: A novel, innovative teaching adjunct in oral pathology" Medknow 15 (15): 133-137, 2011

      35 Wadood AA, "Plastination of whole brain specimen and brain slices" 13 : 11-13, 2001

      36 Beat M. Riederer, "Plastination and its importance in teaching anatomy. Critical points for long-term preservation of human tissue" Wiley 224 (224): 309-315, 2014

      37 Daniel L. Marks, "Plastinated tissue samples as three-dimensional models for optical instrument characterization" The Optical Society 16 (16): 16272-16283, 2008

      38 Brian Hsueh, "Pathways to clinical CLARITY: volumetric analysis of irregular, soft, and heterogeneous tissues in development and disease" Springer Science and Business Media LLC 7 (7): 5899-, 2017

      39 Elisabete C. Costa, "Optical clearing methods: An overview of the techniques used for the imaging of 3D spheroids" Wiley 116 (116): 2742-2763, 2019

      40 Patrick Theer, "On the fundamental imaging-depth limit in two-photon microscopy" The Optical Society 23 (23): 3139-3149, 2006

      41 L. F. Hoyt, "New Table of the Refractive Index of Pure Glycerol at 20°C" American Chemical Society (ACS) 26 (26): 329-332, 1934

      42 Robin J. Vigouroux, "Neuroscience in the third dimension: shedding new light on the brain with tissue clearing" Springer Science and Business Media LLC 10 (10): 33-, 2017

      43 Emily Lauren Sylwestrak, "Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution" Elsevier BV 164 (164): 792-804, 2016

      44 E Kolodziejczyk, "Multiple immunolabeling in histology: a new method using thermo-inactivation of immunoglobulins." SAGE Publications 34 (34): 1725-1729, 1986

      45 Shamala Ravikumar, "Mounting media: An overview" Medknow 3 (3): 1-8, 2014

      46 Jonathan D. Pollock, "Molecular neuroanatomy: a generation of progress" Elsevier BV 37 (37): 106-123, 2014

      47 Vivien Marx, "Microscopy: seeing through tissue" Springer Science and Business Media LLC 11 (11): 1209-1214, 2014

      48 Nicholas J. Durr, "Maximum imaging depth of two-photon autofluorescence microscopy in epithelial tissues" SPIE-Intl Soc Optical Eng 16 (16): 026008-, 2011

      49 Alberto Diaspro, "Influence of refractive-index mismatch in high-resolution three-dimensional confocal microscopy" The Optical Society 41 (41): 685-690, 2002

      50 Viviana Gradinaru, "Hydrogel-Tissue Chemistry: Principles and Applications" Annual Reviews 47 (47): 355-376, 2018

      51 Derek Magee, "Histopathology in 3D: From three-dimensional reconstruction to multi-stain and multi-modal analysis" Medknow 6 (6): 6-, 2015

      52 Linfeng Li, "High-throughput imaging: Focusing in on drug discovery in 3D" Elsevier BV 96 : 97-102, 2016

      53 Aurore Masson, "High-resolution in-depth imaging of optically cleared thick samples using an adaptive SPIM" Springer Science and Business Media LLC 5 (5): 16898-, 2015

      54 Rietdorf J, "Handbook of biological confocal microscopy" Springer 43-58, 2006

      55 Anna Khimchenko, "Extending two-dimensional histology into the third dimension through conventional micro computed tomography" Elsevier BV 139 : 26-36, 2016

      56 Yoko Hayashi-Takanaka, "Evaluation of Chemical Fluorescent Dyes as a Protein Conjugation Partner for Live Cell Imaging" Public Library of Science (PLoS) 9 (9): e106271-, 2014

      57 Ryan M. Rich, "Elimination of autofluorescence background from fluorescence tissue images by use of time-gated detection and the AzaDiOxaTriAngulenium (ADOTA) fluorophore" Springer Science and Business Media LLC 405 (405): 2065-2075, 2013

      58 Wenxia Su, "Elimination of Autofluorescence in Archival Formaldehyde-Fixed, Paraffin-Embedded Bone Marrow Biopsies" Archives of Pathology and Laboratory Medicine 143 (143): 362-369, 2018

      59 F. Tokumasu, "Development and application of quantum dots for immunocytochemistry of human erythrocytes" Wiley 211 (211): 256-261, 2003

      60 Z. Xu, "Denonvilliers’ fascia in men: a sheet plastination and confocal microscopy study of the prerectal space and the presence of an optimal anterior plane when mobilizing the rectum for cancer" Wiley 20 (20): 236-242, 2018

      61 Esther Abels, "Current state of the regulatory trajectory for whole slide imaging devices in the USA" Medknow 8 (8): 23-, 2017

      62 Werner Baschong, "Control of Autofluorescence of Archival Formaldehyde-fixed, Paraffin-embedded Tissue in Confocal Laser Scanning Microscopy (CLSM)" SAGE Publications 49 (49): 1565-1571, 2001

      63 Ludovico Silvestri, "Clearing of fixed tissue: a review from a microscopist’s perspective" SPIE-Intl Soc Optical Eng 21 (21): 081205-, 2016

      64 Sung-Yon Kim, "Clearing and Labeling Techniques for Large-Scale Biological Tissues" 한국분자세포생물학회 39 (39): 439-446, 2016

      65 Douglas S. Richardson, "Clarifying Tissue Clearing" Elsevier BV 162 (162): 246-257, 2015

      66 Kazuki Tainaka, "Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling" Annual Reviews 32 (32): 713-741, 2016

      67 Sylwia Libard, "Characteristics of the tissue section that influence the staining outcome in immunohistochemistry" Springer Science and Business Media LLC 151 (151): 91-96, 2019

      68 P. Y. Liu, "Cell refractive index for cell biology and disease diagnosis: past, present and future" Royal Society of Chemistry (RSC) 16 (16): 634-644, 2016

      69 Satoshi Nojima, "CUBIC pathology: three-dimensional imaging for pathological diagnosis" Springer Science and Business Media LLC 7 (7): 9269-, 2017

      70 Kristian H. Reveles Jensen, "Advances and perspectives in tissue clearing using CLARITY" Elsevier BV 86 : 19-34, 2017

      71 Seo J, "Advanced optical methods for brain imaging" Springer 295-334, 2019

      72 Raju Tomer, "Advanced CLARITY for rapid and high-resolution imaging of intact tissues" Springer Science and Business Media LLC 9 (9): 1682-1697, 2014

      73 Yong Woong Jun, "Addressing the autofluorescence issue in deep tissue imaging by two-photon microscopy: the significance of far-red emitting dyes" Royal Society of Chemistry (RSC) 8 (8): 7696-7704, 2017

      74 Eunsoo Lee, "ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging" Springer Science and Business Media LLC 6 (6): 31940-, 2016

      75 Eunsoo Lee, "ACT-PRESTO: Biological Tissue Clearing and Immunolabeling Methods for Volume Imaging" MyJove Corporation (118) : E54904-, 2016

      76 Adriano Azaripour, "A survey of clearing techniques for 3D imaging of tissues with special reference to connective tissue" Elsevier BV 51 (51): 9-23, 2016

      77 Haison Duong, "A multispectral LED array for the reduction of background autofluorescence in brain tissue" Elsevier BV 220 (220): 46-54, 2013

      78 Haison Duong, "A multispectral LED array for the reduction of background autofluorescence in brain tissue" Elsevier BV 220 (220): 46-54, 2013

      79 H. Steinke, "A modified Spalteholz technique with preservation of the histology" Elsevier BV 183 (183): 91-95, 2001

      80 Pablo Ariel, "A beginner’s guide to tissue clearing" Elsevier BV 84 : 35-39, 2017

      81 John T. Gamble, "A Combination Bleaching-Clearing Agent and Its Use in the Processing of “Spalteholz” Preparations" Informa UK Limited 20 (20): 127-128, 2009

      82 Yi Song, "3D reconstruction of multiple stained histology images" Medknow 4 (4): 7-, 2013

      83 Ando K, "3D imaging in the postmortem human brain with CLARITY and CUBIC" 150 : 303-317, 2018

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2026 평가예정 재인증평가 신청대상 (재인증)
      2020-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2017-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2016-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-08 학술지명변경 한글명 : 대한임상검사학회지 -> 대한임상검사과학회지
      외국어명 : 미등록 -> Korean Journal of Clinical Laboratory Science
      KCI등재후보
      2014-06-25 학회명변경 한글명 : 대한임상검사학회 -> 대한임상검사과학회
      영문명 : The Korean Society for Clinical Laboratory Science -> Korean Society for Clinical Laboratory Science
      KCI등재후보
      2014-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
      2004-12-17 학회명변경 영문명 : The Korean Society Of Biomedical Laboratory Science -> The Korean Society for Clinical Laboratory Science
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.43 0.43 0.36
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.31 0.28 0.34 0.12
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