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      KCI등재후보

      NADH-dependent butanol dehydrogenase from Fusobacterium nucleatum: purification, crystallization, and X-ray crystallographic analysis

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      https://www.riss.kr/link?id=A108175051

      • 저자

        Xue Bai (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Jing Lan (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Shanru He (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Tingting Bu (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Jie Zhang (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Lulu Wang (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Chunshan Quan (Dalian Minzu University, Dalian 116600, Liaoning, China) ;  Ki Hyun Nam (Department of Life Science, Pohang University of Science and Technology, Pohang 35398, Korea) ;  Nam-Chul Ha (Seoul National University) ;  Yongbin Xu (Dalian Minzu University, Dalian 116600, Liaoning, China)

      • 발행기관
      • 학술지명
      • 권호사항
      • 발행연도

        2022

      • 작성언어

        English

      • 등재정보

        KCI등재후보

      • 자료형태

        학술저널

      • 수록면

        29-33(5쪽)

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      부가정보

      다국어 초록 (Multilingual Abstract)

      Fusobacterium nucleatum is a dangerous pathogen, and it has been linked to a variety of health problems, including cancer, periodontal disease, and pregnancy complications. F. nucleatum butanol dehydrogenase (FnYqdH) is a group of dehydrogenase enzyme...

      Fusobacterium nucleatum is a dangerous pathogen, and it has been linked to a variety of health problems, including cancer, periodontal disease, and pregnancy complications. F. nucleatum butanol dehydrogenase (FnYqdH) is a group of dehydrogenase enzymes that facilitate interconversion between butyraldehyde and butanol at the expenditure of a cofactor NAD (P)H. In this study, FnYqdH was successfully expressed and purified using Ni-NTA affinity, Q anionexchange, and gel-filtration chromatography. The protein crystal was obtained and diffracted to a resolution of 2.0 Å. The crystal belonged to the orthorhombic space group of I222, with unit-cell parameters of a = 64.77, b = 78.85, and c = 215.22 Å. The Matthews coefficient and solvent content were estimated to be 3.19 Å3 Da–1 and 61.49%, respectively, assuming that the asymmetric unit contained only one recombinant protein molecule. Size-exclusion chromatography suggested that FnYqdH prefers to exist as a dimer in the solution.

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      참고문헌 (Reference)

      1 Ganesan, K., "Targeting programmed Fusobacterium nucleatum Fap2 for colorectal cancer therapy" 11 : 1592-, 2019

      2 Otwinowski, Z., "Processing of X-ray diffraction data collected in oscillation mode" 276 : 307-326, 1997

      3 Canani, R. B., "Potential beneficial effects of butyrate in intestinal and extraintestinal diseases" 17 : 1519-1528, 2011

      4 Kapatral, V., "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586" 184 : 2005-2018, 2002

      5 Brennan, C. A., "Fusobacterium nucleatum-symbiont, opportunist and oncobacterium" 17 : 156-166, 2019

      6 Shang, F. M., "Fusobacterium nucleatum and colorectal cancer : a review" 10 : 71-81, 2018

      7 Salvi, P. S., "Butyrate and the intestinal epithelium : modulation of proliferation and inflammation in homeostasis and disease" 10 : 1775-, 2021

      8 Wang, Z., "Automatic crystal centring procedure at the SSRF macromolecular crystallography beamline" 23 : 1323-1332, 2016

      9 Merritt, J., "Autoaggregation response of Fusobacterium nucleatum" 75 : 7725-7733, 2009

      10 Duncan, S. H., "Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine" 68 : 5186-5190, 2002

      1 Ganesan, K., "Targeting programmed Fusobacterium nucleatum Fap2 for colorectal cancer therapy" 11 : 1592-, 2019

      2 Otwinowski, Z., "Processing of X-ray diffraction data collected in oscillation mode" 276 : 307-326, 1997

      3 Canani, R. B., "Potential beneficial effects of butyrate in intestinal and extraintestinal diseases" 17 : 1519-1528, 2011

      4 Kapatral, V., "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586" 184 : 2005-2018, 2002

      5 Brennan, C. A., "Fusobacterium nucleatum-symbiont, opportunist and oncobacterium" 17 : 156-166, 2019

      6 Shang, F. M., "Fusobacterium nucleatum and colorectal cancer : a review" 10 : 71-81, 2018

      7 Salvi, P. S., "Butyrate and the intestinal epithelium : modulation of proliferation and inflammation in homeostasis and disease" 10 : 1775-, 2021

      8 Wang, Z., "Automatic crystal centring procedure at the SSRF macromolecular crystallography beamline" 23 : 1323-1332, 2016

      9 Merritt, J., "Autoaggregation response of Fusobacterium nucleatum" 75 : 7725-7733, 2009

      10 Duncan, S. H., "Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine" 68 : 5186-5190, 2002

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2022 평가예정 계속평가 신청대상 (계속평가)
      2020-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
      2019-12-01 평가 등재후보 탈락 (계속평가)
      2017-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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