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      KCI등재 SCOPUS SCIE

      Thrap3 promotes R-loop resolution via interaction with methylated DDX5

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      https://www.riss.kr/link?id=A107888664

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      다국어 초록 (Multilingual Abstract)

      Transcription-replication conflicts lead to DNA damage and genomic instability, which are closely related to human diseases. A major source of these conflicts is the formation of R-loops, which consist of an RNA-DNA hybrid and a displaced single-stran...

      Transcription-replication conflicts lead to DNA damage and genomic instability, which are closely related to human diseases. A major source of these conflicts is the formation of R-loops, which consist of an RNA-DNA hybrid and a displaced single-stranded DNA. Although these structures have been studied, many aspects of R-loop biology and R-loop-mediated genome instability remain unclear. Here, we demonstrate that thyroid hormone receptor-associated protein 3 (Thrap3) plays a critical role in regulating R-loop resolution. In cancer cells, Thrap3 interacts with DEAD-box helicase 5 (DDX5) and localizes to R-loops. Arginine-mediated methylation of DDX5 is required for its interaction with Thrap3, and the Thrap3-DDX5 axis induces the recruitment of 5’-3’ exoribonuclease 2 (XRN2) into R-loops. Loss of Thrap3 increases R-loop accumulation and DNA damage. These findings suggest that Thrap3 mediates resistance to cell death by preventing R-loop accumulation in cancer cells.

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      참고문헌 (Reference)

      1 Hamperl, S., "Transcriptionreplication conflict orientation modulates R-loop levels and activates distinct DNA damage responses" 170 : 774-786, 2017

      2 Lee, J. H., "Tonicity-responsive enhancer-binding protein promotes hepatocellular carcinogenesis, recurrence and metastasis" 68 : 347-358, 2019

      3 Kang, H. J., "TonEBP regulates PCNA polyubiquitination in response to DNA damage through interaction with SHPRH and USP1" 19 : 177-190, 2019

      4 Kang, H. J., "TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution" 49 : 269-284, 2020

      5 Meng, X., "The interplay between the DNA damage response, RNA processing and extracellular vesicles" 9 : 1538-, 2020

      6 Choi, S. Y., "The evolving role of TonEBP as an immunometabolic stress protein" 16 : 352-364, 2020

      7 Vohhodina, J., "The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export" 45 : 12816-12833, 2017

      8 Li, X., "The RNA binding protein RNPS1 alleviates ASF/SF2depletion-induced genomic instability" 13 : 2108-2115, 2007

      9 Buszczak, M., "The Drosophila P68 RNA helicase regulates transcriptional deactivation by promoting RNA release from chromatin" 20 : 977-989, 2006

      10 Wortham, N. C., "The DEAD-box protein p72 regulates ERalpha-/oestrogendependent transcription and cell growth, and is associated with improved survival in ERalpha-positive breast cancer" 28 : 4053-4064, 2009

      1 Hamperl, S., "Transcriptionreplication conflict orientation modulates R-loop levels and activates distinct DNA damage responses" 170 : 774-786, 2017

      2 Lee, J. H., "Tonicity-responsive enhancer-binding protein promotes hepatocellular carcinogenesis, recurrence and metastasis" 68 : 347-358, 2019

      3 Kang, H. J., "TonEBP regulates PCNA polyubiquitination in response to DNA damage through interaction with SHPRH and USP1" 19 : 177-190, 2019

      4 Kang, H. J., "TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution" 49 : 269-284, 2020

      5 Meng, X., "The interplay between the DNA damage response, RNA processing and extracellular vesicles" 9 : 1538-, 2020

      6 Choi, S. Y., "The evolving role of TonEBP as an immunometabolic stress protein" 16 : 352-364, 2020

      7 Vohhodina, J., "The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export" 45 : 12816-12833, 2017

      8 Li, X., "The RNA binding protein RNPS1 alleviates ASF/SF2depletion-induced genomic instability" 13 : 2108-2115, 2007

      9 Buszczak, M., "The Drosophila P68 RNA helicase regulates transcriptional deactivation by promoting RNA release from chromatin" 20 : 977-989, 2006

      10 Wortham, N. C., "The DEAD-box protein p72 regulates ERalpha-/oestrogendependent transcription and cell growth, and is associated with improved survival in ERalpha-positive breast cancer" 28 : 4053-4064, 2009

      11 Cloutier, S. C., "The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription" 287 : 26155-26166, 2012

      12 Lee, K. M., "TRAP150 activates pre-mRNA splicing and promotes nuclear mRNA degradation" 38 : 3340-3350, 2010

      13 Stroud, J. C., "Structure of a TonEBP-DNA complex reveals DNA encircled by a transcription factor" 9 : 90-94, 2002

      14 Xiang, Y., "RNA m(6)A methylation regulates the ultraviolet-induced DNA damage response" 543 : 573-576, 2017

      15 Allison, D. F., "R-loops : formation, function, and relevance to cell stress" 3 : 38-46, 2019

      16 Gan, W., "R-loop-mediated genomic instability is caused by impairment of replication fork progression" 25 : 2041-2056, 2011

      17 Ginno, P. A., "R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters" 45 : 814-825, 2012

      18 Crossley, M. P., "R-Loops as cellular regulators and genomic threats" 73 : 398-411, 2019

      19 Aguilera, A., "R loops : from transcription byproducts to threats to genome stability" 46 : 115-124, 2012

      20 García-Muse, T., "R loops : from physiological to pathological roles" 179 : 604-618, 2019

      21 Beli, P., "Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response" 46 : 212-225, 2012

      22 Han, J., "Pre-mRNA splicing : where and when in the nucleus" 21 : 336-343, 2011

      23 Groh, M., "Out of balance : R-loops in human disease" 10 : e1004630-, 2014

      24 Lee, H. H., "LPS-induced NFkappaB enhanceosome requires TonEBP/NFAT5without DNA binding" 6 : 24921-, 2016

      25 Screaton, G. R., "Identification and characterization of three members of the human SR family of pre-mRNA splicing factors" 14 : 4336-4349, 1995

      26 Villarreal, O. D., "Genome-wide Rloop analysis defines unique roles for DDX5, XRN2, and PRMT5 in DNA/RNA hybrid resolution" 3 : e202000762-, 2020

      27 Guillaume Giraud, "Functions of DEAD box RNA helicases DDX5 and DDX17 in chromatin organization and transcriptional regulation" 생화학분자생물학회 51 (51): 613-622, 2018

      28 Smith, L. C., "Differential recruitment of co-regulatory proteins to the human estrogen receptor 1 in response to xenoestrogens" 19 : 159-173, 2016

      29 Britton, S., "DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal" 42 : 9047-9062, 2014

      30 Legrand, J. M. D., "DDX5 plays essential transcriptional and posttranscriptional roles in the maintenance and function of spermatogonia" 10 : 2278-, 2019

      31 Stork, C. T., "Co-transcriptional R-loops are the main cause of estrogeninduced DNA damage" 5 : e17548-, 2016

      32 Sollier, J., "Breaking bad : R-loops and genome integrity" 25 : 514-522, 2015

      33 Bhatia, V., "BRCA2 prevents R-loop accumulation and associates with TREX-2mRNA export factor PCID2" 511 : 362-365, 2014

      34 Mersaoui, S. Y., "Arginine methylation of the DDX5 helicase RGG/RG motif by PRMT5 regulates resolution of RNA : DNA hybrids" 38 : e100986-, 2019

      35 Kim, S., "ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork" 48 : 7218-7238, 2020

      36 Skourti-Stathaki, K., "A double-edged sword : R loops as threats to genome integrity and powerful regulators of gene expression" 28 : 1384-1396, 2014

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2009-09-21 학회명변경 한글명 : 대한생화학ㆍ분자생물학회 -> 생화학분자생물학회
      영문명 : Korean Society Of Medical Biochemistry And Molecular Biology -> Korean Society Of Biochemistry And Molecular Biology
      KCI등재
      2008-01-01 평가 SCI 등재 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1998-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 3.74 0.23 2.56
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      1.82 1.45 0.555 0.01
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