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      KCI등재 SCOPUS SCIE

      Histone Deacetylases in Rice Development and Stress Responses

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      https://www.riss.kr/link?id=A108185676

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      다국어 초록 (Multilingual Abstract)

      Histone deacetylases (HDACs) repress gene transcription by deacetylating histone lysine residues in eukaryotes; histone acetyltransferases have the opposite role, adding acetyl groups to histone lysine residues. HDACs have been identified in many plan...

      Histone deacetylases (HDACs) repress gene transcription by deacetylating histone lysine residues in eukaryotes; histone acetyltransferases have the opposite role, adding acetyl groups to histone lysine residues. HDACs have been identified in many plant species and these plant HDACs have diverse biological functions, modulating the expression of genes involved in plant growth, development, and responses to environmental stresses. The roles of HDACs have been intensively investigated in the model dicot plant Arabidopsis thaliana, but their functions are less well understood in other plant species. In rice (Oryza sativa), HDACs have regulatory roles in various processes such as root and leaf development, flowering time, seed germination, and the responses to abiotic and biotic stresses. The biological roles of HDACs are relatively conserved in Arabidopsis and rice, but many aspects of their regulatory mechanisms differ between the two species. In addition, several studies in rice revealed novel regulatory functions that have not yet been reported in other plants. Here, we review recent advances in the understanding of rice HDACs.

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      참고문헌 (Reference)

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      6 Wang L, "Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription" 110 : 761-766, 2013

      7 Zhong X, "The rice NAD(+)-dependent histone deacetylase OsSRT1 targets preferentially to stress-and metabolism-related genes and transposable elements" 8 : e66807-, 2013

      8 Strahl BD, "The language of covalent histone modifcations" 403 : 41-45, 2000

      9 Xie Y, "The intronic cis element SE1 recruits trans-acting repressor complexes to repress the expression of elongated uppermost internode1 in rice" 11 : 720-735, 2018

      10 Chung PJ, "The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice" 59 : 764-776, 2009

      1 서필준, "m6 A mRNA Modifcation as a New Layer of Gene Regulation in Plants" 한국식물학회 63 (63): 97-106, 2020

      2 Namira Arif ; Nilesh C. Sharma ; Vaishali Yadav ; Naleeni Ramawat ; Nawal Kishore Dubey ; Durgesh Kumar Tripathi ; Devendra Kumar Chauhan ; Shivendra Sahi, "Understanding Heavy Metal Stress in a Rice Crop: Toxicity, Tolerance Mechanisms, and Amelioration Strategies" 한국식물학회 62 (62): 239-253, 2019

      3 Jenuwein T, "Translating the histone code" 293 : 1074-, 2001

      4 Imai S, "Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase" 403 : 795-800, 2000

      5 Liu X, "Transcriptional repression by histone deacetylases in plants" 7 : 764-772, 2014

      6 Wang L, "Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription" 110 : 761-766, 2013

      7 Zhong X, "The rice NAD(+)-dependent histone deacetylase OsSRT1 targets preferentially to stress-and metabolism-related genes and transposable elements" 8 : e66807-, 2013

      8 Strahl BD, "The language of covalent histone modifcations" 403 : 41-45, 2000

      9 Xie Y, "The intronic cis element SE1 recruits trans-acting repressor complexes to repress the expression of elongated uppermost internode1 in rice" 11 : 720-735, 2018

      10 Chung PJ, "The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice" 59 : 764-776, 2009

      11 Wang H, "The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression" 104 : 447-459, 2020

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      14 Ning YQ, "The HDA19 histone deacetylase complex is involved in the regulation of fowering time in a photoperiod-dependent manner" 98 : 448-464, 2019

      15 Jang IC, "Structure and expression of the rice class-I type histone deacetylase genes OsHDAC1-3 : OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture" 33 : 531-541, 2003

      16 Fu W, "Sequence and expression analysis of histone deacetylases in rice" 356 : 843-850, 2007

      17 Niu D, "SIZ1-mediated SUMOylation of TPR1 suppresses plant immunity in Arabidopsis" 12 : 215-228, 2019

      18 Kumar V, "Role of GhHDA5 in H3K9 deacetylation and fber initiation in Gossypium hirsutum" 95 : 1069-1083, 2018

      19 Lee YS, "Rice miR172 induces fowering by suppressing OsIDS1 and SNB, two AP2 genes that negatively regulate expression of Ehd1 and forigens" 7 : 31-, 2014

      20 Hu Y, "Rice histone deacetylase genes display specifc expression patterns and developmental functions" 388 : 266-271, 2009

      21 Zhao J, "Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density" 254 : 79-, 2021

      22 Zhang H, "Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes" 45 : 12241-12255, 2017

      23 Caron C, "Regulatory cross-talk between lysine acetylation and ubiquitination : role in the control of protein stability" 27 : 408-415, 2005

      24 Finkemeier I, "Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis" 155 : 1779-1790, 2011

      25 Luo M, "Plant responses to abiotic stress regulated by histone deacetylases" 8 : 2147-, 2017

      26 Musselman CA, "Perceiving the epigenetic landscape through histone readers" 19 : 18-27, 2012

      27 Zhao N, "Over-expression of HDA710 delays leaf senescence in rice(Oryza sativa L)" 8 : 471-, 2020

      28 Zhang H, "OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression" 248 : 28-36, 2016

      29 Xue W, "Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice" 40 : 761-767, 2008

      30 Tang N, "MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice" 28 : 2161-2177, 2016

      31 Hartl M, "Lysine acetylome profling uncovers novel histone deacetylase substrate proteins in Arabidopsis" 13 : 949-, 2017

      32 Choudhary C, "Lysine acetylation targets protein complexes and co-regulates major cellular functions" 325 : 834-840, 2009

      33 Wu X, "Lysine acetylation is a widespread protein modifcation for diverse proteins in Arabidopsis" 155 : 1769-1778, 2011

      34 Lim PO, "Leaf senescence" 58 : 115-136, 2007

      35 Zhao J, "Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses" 470 : 439-444, 2016

      36 Cheng X, "Indeterminate spikelet1 recruits Histone deacetylase and a transcriptional repression complex to regulate rice salt tolerance" 178 : 824-837, 2018

      37 Zhang K, "In silico analysis of maize HDACs with an emphasis on their response to biotic and abiotic stresses" 8 : e8539-, 2020

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      39 de Ruijter AJ, "Histone deacetylases(HDACs) : characterization of the classical HDAC family" 370 : 737-749, 2003

      40 Xu Q, "Histone deacetylases control lysine acetylation of ribosomal proteins in rice" 49 : 4613-4628, 2021

      41 Ma X, "Histone deacetylases and their functions in plants" 32 : 465-478, 2013

      42 Yu CW, "Histone deacetylase6 interacts with fowering locus D and regulates fowering in Arabidopsis" 156 : 173-184, 2011

      43 Hollender C, "Histone deacetylase genes in Arabidopsis development" 50 : 875-885, 2008

      44 Ellmeier W, "Histone deacetylase function in CD4+ T cells" 18 : 617-634, 2018

      45 Ullah F, "Histone deacetylase HDA710controls salt tolerance by regulating ABA signaling in rice" 63 : 451-467, 2021

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      47 Kurdistani SK, "Histone acetylation and deacetylation in yeast" 4 : 276-284, 2003

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      49 조래현 ; 윤진미 ; Antt Htet Wai ; 안진흥, "Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1" 한국분자세포생물학회 41 (41): 665-675, 2018

      50 Komiya R, "Hd3a and RFT1 are essential for fowering in rice" 135 : 767-774, 2008

      51 Yano M, "Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis fowering time gene CONSTANS" 12 : 2473-2484, 2000

      52 Zhou C, "HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis" 17 : 1196-1204, 2005

      53 Ding B, "HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defenserelated genes in rice" 24 : 3783-3794, 2012

      54 Liu X, "HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis" 158 : 119-129, 2012

      55 Choi SM, "HDA19 is required for the repression of salicylic acid biosynthesis and salicylic acid-mediated defense responses in Arabidopsis" 71 : 135-146, 2012

      56 Jin P, "Genome-wide identifcation and expression analysis of the histone deacetylase gene family in wheat(Triticum aestivum L. )" 10 : 19-, 2020

      57 AieseCigliano R, "Genome-wide analysis of histone modifers in tomato : gaining an insight into their developmental roles" 14 : 57-, 2013

      58 Chen X, "Functions and mechanisms of plant histone deacetylases" 63 : 206-216, 2020

      59 Narita T, "Functions and mechanisms of non-histone protein acetylation" 20 : 156-174, 2019

      60 Zhao J, "Expression and functional analysis of the plant-specifc histone deacetylase HDT701 in rice" 5 : 764-, 2015

      61 Zhu Y, "Elongated uppermost internode encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice" 18 : 442-456, 2006

      62 Doi K, "Ehd1, a B-type response regulator in rice, confers short-day promotion of fowering and controls FT-like gene expression independently of Hd1" 18 : 926-936, 2004

      63 Luo A, "EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice" 47 : 181-191, 2006

      64 Kubo FC, "Dwarf with slender leaf1 encoding a histone deacetylase plays diverse roles in rice development" 61 : 457-469, 2020

      65 Huang L, "Down-regulation of a silent information regulator2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice" 144 : 1508-1519, 2007

      66 Fang C, "Control of leaf senescence by an MeOH-jasmonates cascade that is epigenetically regulated by OsSRT1 in rice" 9 : 1366-1378, 2016

      67 Tang N, "Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice" 158 : 1755-1768, 2012

      68 Dangl M, "Comparative analysis of HD2 type histone deacetylases in higher plants" 213 : 280-285, 2001

      69 Zhang W, "Cloning and expression characterization of histone deacetylase gene HDA705 promoter in rice(Oryza sativa)" 22 : 77-82, 2014

      70 Wei H, "Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis" 40 : e105086-, 2021

      71 Yang C, "Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean" 18 : 226-, 2018

      72 Tran HT, "Arabidopsis thaliana histone deacetylase 14(HDA14)is an α-tubulin deacetylase that associates with PP2A and enriches in the microtubule fraction with the putative histone acetyltransferase ELP3" 71 : 263-272, 2012

      73 Pandey R, "Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversifcation of chromatin modification among multicellular eukaryotes" 30 : 5036-5055, 2002

      74 Li C, "Altered levels of histone deacetylase OsHDT1 afect diferential gene expression patterns in hybrid rice" 6 : e21789-, 2011

      75 Kouzarides T, "Acetylation : a regulatory modifcation to rival phosphorylation?" 19 : 1176-1179, 2000

      76 Li CX, "ABA regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza sativa" 56 : 2396-2408, 2015

      77 Huang XY, "A previously unknown zinc fnger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control" 23 : 1805-1817, 2009

      78 Xiong Y, "A comprehensive catalog of the lysine-acetylation targets in rice(Oryza sativa)based on proteomic analyses" 138 : 20-29, 2016

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