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A factor graph and belief propagation can be used for finding stochastic values of link weights in biological networks. However it is not easy to follow the process of use and so we presented the process with a toy network of three nodes in our prior...
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RISS 인기검색어
https://www.riss.kr/link?id=A108140808
-
저자
Sang-Mok Choo (University of Ulsan) ; Young-Hee Kim (Kwangwoon University)
- 발행기관
- 학술지명
- 권호사항
-
발행연도
2022
-
작성언어
English
- 주제어
-
등재정보
KCI등재
-
자료형태
학술저널
-
수록면
515-530(16쪽)
-
KCI 피인용횟수
0
- 제공처
- 소장기관
-
0
상세조회 -
0
다운로드
부가정보
다국어 초록 (Multilingual Abstract)
A factor graph and belief propagation can be used for finding stochastic values of link weights in biological networks. However it is not easy to follow the process of use and so we presented the process with a toy network of three nodes in our prior work. We extend this work more generally and present numerical example for a network of 100 nodes.
참고문헌 (Reference)
1 J. D. J. Hand, "Understanding biological functions through molecular networks" 18 : 224-237, 2008
2 J. S. Yedidia, "Understanding belief propagation and its generalizations" 8 : 236-239, 2003
3 H. A. Loeliger, "The factor graph approach to model-based signal processing" 95 : 1295-1322, 2007
4 A. Braustein, "Survey propagation : An algorithm for satisfiablility" 27 : 201-226, 2005
5 J. Pearl, "Probabilistic Reasoning in Intelligent systems: Networks of Plausible Inference" Morgan Kaufmann 1988
6 E. J. Molinelli, "Perturbation biology: inferring signaling networks in cellular systems" 9 : 2013
7 A. Korkut, "Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells" 4 : 2015
8 C. M. Bishop, "Pattern recognition and machine learning" springer 2006
9 Q. Su, "On Convergence Conditions of Gaussian Belief Propagation" 63 : 1144-1155, 2015
10 D. R. Hunter, "Notes for a Graduate-Level Course in Asymptotics for Statics" Penn State University 2014
1 J. D. J. Hand, "Understanding biological functions through molecular networks" 18 : 224-237, 2008
2 J. S. Yedidia, "Understanding belief propagation and its generalizations" 8 : 236-239, 2003
3 H. A. Loeliger, "The factor graph approach to model-based signal processing" 95 : 1295-1322, 2007
4 A. Braustein, "Survey propagation : An algorithm for satisfiablility" 27 : 201-226, 2005
5 J. Pearl, "Probabilistic Reasoning in Intelligent systems: Networks of Plausible Inference" Morgan Kaufmann 1988
6 E. J. Molinelli, "Perturbation biology: inferring signaling networks in cellular systems" 9 : 2013
7 A. Korkut, "Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells" 4 : 2015
8 C. M. Bishop, "Pattern recognition and machine learning" springer 2006
9 Q. Su, "On Convergence Conditions of Gaussian Belief Propagation" 63 : 1144-1155, 2015
10 D. R. Hunter, "Notes for a Graduate-Level Course in Asymptotics for Statics" Penn State University 2014
11 K. P. Murphy, "Machine learning: a probabilistic perspective" MIT press 2012
12 A. Braunstein, "Inference algorithm for gene networks: a statical mechanics analysis" 2008 : 2008
13 F. R. Kschischang, "Factor graphs and the sum-product algorithm" 47 : 498-519, 2001
14 S. -M. Choo, "Convergence of a Belief Propagation Algorithm for Biological Network" 2019 : 2019
15 W. Materi, "Computational systems biology in cancer : modeling methods and applications" 1 : 91-110, 2007
16 H. F. Fumia, "Boolean network model for cancer pathways : predicting carcinogenesis and targeted therapy outcomes" 8 : e69008-, 2013
17 M. A. Khamsi, "An introduction to metric spaces and fixed point theory" J. Wiley and Sons 2011
18 H. A. Loeliger, "An introduction to factor graphs" 21 : 28-41, 2004
19 T. Heskes, "Advances in neural information processing systems" 359-366, 2003
20 R. Barbuti, "A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models" 2 : 1-20, 2020
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학술지 이력
| 연월일 | 이력구분 | 이력상세 | 등재구분 |
|---|---|---|---|
| 2026 | 평가예정 | 재인증평가 신청대상 (재인증) | |
| 2020-01-01 | 평가 | 등재학술지 유지 (재인증) |  |
| 2019-11-08 | 학회명변경 | 영문명 : The Korean Society For Computational & Applied Mathematics And Korean Sigcam -> Korean Society for Computational and Applied Mathematics | |
| 2017-01-01 | 평가 | 등재학술지 유지 (계속평가) | |
| 2013-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2010-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2008-02-18 | 학술지명변경 | 한글명 : Journal of Applied Mathematics and Infomatics(Former: Korean J. of Comput. and Appl. Math.) -> Journal of Applied Mathematics and Informatics외국어명 : Journal of Applied Mathematics and Infomatics(Former: Korean J. of Comput. and Appl. Math.) -> Journal of Applied Mathematics and Informatics | |
| 2008-02-15 | 학술지명변경 | 한글명 : Journal of Applied Mathematics and Computing(Former: Korean J. of Comput. and Appl. Math.) -> Journal of Applied Mathematics and Infomatics(Former: Korean J. of Comput. and Appl. Math.)외국어명 : Journal of Applied Mathematics and Computing(Former: Korean J. of Comput. and Appl. Math.) -> Journal of Applied Mathematics and Infomatics(Former: Korean J. of Comput. and Appl. Math.) | |
| 2008-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2006-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2004-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2001-01-01 | 평가 | 등재학술지 선정 (등재후보2차) | |
| 1998-07-01 | 평가 | 등재후보학술지 선정 (신규평가) |  |
학술지 인용정보
| 기준연도 | WOS-KCI 통합IF(2년) | KCIF(2년) | KCIF(3년) |
|---|---|---|---|
| 2016 | 0.16 | 0.16 | 0.13 |
| KCIF(4년) | KCIF(5년) | 중심성지수(3년) | 즉시성지수 |
| 0.1 | 0.07 | 0.312 | 0.02 |
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