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      KCI등재 SCOPUS

      제주도 연안 해양에서 분리한 한천분해 미생물 Vibrio sp. S4의 동정 및 내열성 agarase의 생화학적 특성 = Identification of a New Agar-hydrolyzing Bacterium Vibrio sp. S4 from the Seawater of Jeju Island and the Biochemical Characterization of Thermostable Agarose

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      https://www.riss.kr/link?id=A101696075

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      국문 초록 (Abstract)

      대한민국 제주도 연안 해수로부터 agarase를 생산하는 균주 S4를 분리하였다. 균주 S4는 그람-음성의 막대형 세포로 부드러운 베이지색 원형 콜로니를 형성하며, 한 개의 극성 편모를 갖는다. S4...

      대한민국 제주도 연안 해수로부터 agarase를 생산하는 균주 S4를 분리하였다. 균주 S4는 그람-음성의 막대형 세포로 부드러운 베이지색 원형 콜로니를 형성하며, 한 개의 극성 편모를 갖는다. S4 균주는 15-42°C, 0.5-5%(w/v) NaCl, pH 6.0-9.0, 0.5-5%(w/v) NaCl 농도에서 안정된 성장을 보인다. S4균주의 G+C content는 49.93 mol%, 세포내 주요 지방산 (>15%)은 C18:1ω7c, C16:0, Summed feature 3(comprising C16:1ω7c/iso-C15:0 2-OH)이다. 16S rRNA 염기서열, 생화학적 및 분류학정 특징에 기초하여 S4 균주를 Vibrio sp. S4로 명명하였다. 0.1% agar를 첨가한 액체배지에서 S4 균주는 72시간에 세포농도와 agarase 활성이 최대치를 보였다. 반면, agar 를 첨가하지 않은 배양액에서의 agarase 활성은 무시할만한 수준이었으며, 이는 균주의 agarase 유전자 발현이 agar에 의해 유도됨을 시사하고 있다. 균주 S4가 세포외부로 분비하는 총 agarase는 45oC와 pH 7.0에서 최상의 효소 활성을 보였으며, agarose를 분해하여 (neo)agarotetraose 와 (neo)agarohexaose를 생산하였다.

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      다국어 초록 (Multilingual Abstract)

      Agar-hydrolyzing bacteria were isolated from the coastal sea water of Jeju Island. One isolate, designated as S4, was selected for further study. The S4 cells were Gram-negative and rod-shaped with smooth beige surfaces and single polar flagellum. Cel...

      Agar-hydrolyzing bacteria were isolated from the coastal sea water of Jeju Island. One isolate, designated as S4, was selected for further study. The S4 cells were Gram-negative and rod-shaped with smooth beige surfaces and single polar flagellum. Cells were grown at 15-42°C, 0.5-5% (w/v) NaCl, between pH 6.0 and 9.0, and in media containing 0.5-5% (w/v) NaCl. The G+C content was 49.93 mol%. The major fatty acids (>15%) were C18:1ω7c, C16:0 and Summed feature 3 (comprising C16:1ω7c/iso-C15:0 2-OH). Based on 16S rRNA sequencing and biochemical and chemotaxonomic characteristics, the strain was designated as Vibrio sp. S4. In liquid culture supplemented with 0.1% agar the cell density and agarase activity reached a maximum level in 72 h, while agarase activity in the culture without agar was negligible, implying agarose expression is induced by agar. The optimum pH and temperature for the extracellular crude agarase of S4 were 7.0 and 45°C, respectively. However, it also exhibited 98.6% and 87.6% at 40°C and 50°C, respectively, of the maximum activity seen at 45°C. The crude agarase hydrolyzed agarose into (neo)agarotetraose and (neo)agarohexaose.

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      참고문헌 (Reference)

      1 Chimetto LA, "Vibrio variabilis sp. nov. and Vibrio marinus sp. nov., isolated from Palythoa caribaeorum" 026997-026990, 2011

      2 Thompson FL, "Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps)" 53 : 245-252, 2003

      3 Ben-Haim Y, "Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis" 53 : 309-315, 2003

      4 Miller GL, "Use of dinitrosalicylic acid reagent for determination of reducing sugar" 31 : 426-428, 1959

      5 Hehemann JH, "Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota" 464 : 908-912, 2010

      6 Kimura M, "The neutral theory of molecular evolution" Cambridge University Press 1983

      7 Saitou N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      8 Duckworth M, "Structure of agar. I. Fractionation of a complex mixture of polysaccharides" 16 : 189-197, 1971

      9 Usov AI, "Structural analysis of red seaweed galactans of agar and carrageenan groups" 12 : 301-308, 1998

      10 Jiang Li, "Purification and Characterization of Thermostable Agarase from Bacillus sp. BI-3, a Thermophilic Bacterium Isolated from Hot Spring" 한국미생물·생명공학회 24 (24): 19-25, 2014

      1 Chimetto LA, "Vibrio variabilis sp. nov. and Vibrio marinus sp. nov., isolated from Palythoa caribaeorum" 026997-026990, 2011

      2 Thompson FL, "Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps)" 53 : 245-252, 2003

      3 Ben-Haim Y, "Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis" 53 : 309-315, 2003

      4 Miller GL, "Use of dinitrosalicylic acid reagent for determination of reducing sugar" 31 : 426-428, 1959

      5 Hehemann JH, "Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota" 464 : 908-912, 2010

      6 Kimura M, "The neutral theory of molecular evolution" Cambridge University Press 1983

      7 Saitou N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      8 Duckworth M, "Structure of agar. I. Fractionation of a complex mixture of polysaccharides" 16 : 189-197, 1971

      9 Usov AI, "Structural analysis of red seaweed galactans of agar and carrageenan groups" 12 : 301-308, 1998

      10 Jiang Li, "Purification and Characterization of Thermostable Agarase from Bacillus sp. BI-3, a Thermophilic Bacterium Isolated from Hot Spring" 한국미생물·생명공학회 24 (24): 19-25, 2014

      11 Chi WJ, "Production and characterization of a novel thermostable extracellular agarase from Pseudoalteromonas hodoensis newly isolated from the West Sea of South Korea" 173 : 1703-1716, 2014

      12 Mesbah M, "Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography" 39 : 159-167, 1989

      13 Cui F, "Overexpression and characterization of a novel thermostable β-agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T)" 12 : 2731-2747, 2014

      14 Temuujin U, "Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2): an endo-type β-agarase producing neoagarotetraose and neoagarohexaose" 92 : 749-759, 2011

      15 Sasser M, "Identification of bacteria by gas chromatography of cellular fatty acids" MIDI Inc. 1990

      16 Altschul SF, "Gapped BLAST and PSI-BLAST: a new generation of protein data base" 1997

      17 Chun J, "ExTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences" 57 : 2259-2261, 2007

      18 Ohta Y, "Enzymatic properties and nucleotide and amino acid sequences of a thermostable beta-agarase from a novel species of deep-sea Microbulbifer" 64 : 505-514, 2004

      19 Yun EJ, "Enzymatic production of 3,6-anhydro-L-galactose from agarose and its purification and in vitro skin whitening and antiinflammatory activities" 97 : 2961-2970, 2013

      20 Takagi E, "Crystal structure of the catalytic domain of a GH16 β-agarase from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94" 79 : 625-632, 2015

      21 Thomson JD, "CLUSTAL W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice" 22 : 4673-4680, 1994

      22 Chi WJ, "Biochemical characterization of a novel iron-dependent GH16 β-agarase, AgaH92, from an agarolytic bacterium Pseudoalteromonas sp. H9" 362 (362): 2015

      23 Hall TA, "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT" 41 : 95-98, 1999

      24 Suzuki MT, "Bias caused by template annealing in the amplification of mixture of 16S rRNA genes by PCR" 62 : 625-630, 1996

      25 Miller L, "Bacterial identification by gas chromatography of whole cell fatty acid" Hewlett-Packard Application note 228-241, 1985

      26 Xiao TF, "Agarase: Review of major sources, categories, purification method, enzyme characterization and applications" 8 : 200-218, 2010

      27 Chi WJ, "Agar degradation by microorganisms and agar-degrading enzymes" 94 : 917-930, 2012

      28 Knutsen SH, "A modified system of nomenclature for red algal galactans" 37 : 163-169, 1994

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-09-23 학술지명변경 외국어명 : Korean Journal of Microbiology and Biotechnology -> Microbiology and Biotechnology Letters KCI등재
      2010-01-01 평가 등재 1차 FAIL (등재유지) KCI등재
      2008-01-01 평가 등재학술지 유지 (등재유지) KCI등재
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      2001-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1998-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.6 0.6 0.65
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
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