1 Chen, R., "ZDOCK: An initial-stage protein-docking algorithm" 52 : 80-87, 2003
2 Schneider, G., "Virtual screening and fast automated docking methods" 7 (7): 64-70, 2002
3 Besl, P. J., "Three-dimensional object recognition" 17 (17): 75-145, 1985
4 Connolly, M., "Shape complementarity at the Hemoglobin ${\alpha}$1${\beta}$1 Subunit Interface" 25 : 1229-1247, 1986
5 Norel, R., "Shape complementarity at protein-protein interfaces" 34 (34): 933-940, 1994
6 Voruganti, H. K., "Segmentation and parameterization of molecular surfaces for docking" 3 (3): 178-192, 2009
7 Sanner, M., "Reduced surface: An efficient way to compute molecular surfaces" 38 (38): 305-320, 1996
8 Ritchie, D. W., "Recent progress and future directions in protein-protein docking" 9 (9): 1-15, 2008
9 Huang, Q.-X., "Reassembling fractured objects by geometric matching" 25 (25): 569-578, 2006
10 Mitchell, J., "Rapid atomic density methods for molecular shape characterization" 19 (19): 325-330, 2001
1 Chen, R., "ZDOCK: An initial-stage protein-docking algorithm" 52 : 80-87, 2003
2 Schneider, G., "Virtual screening and fast automated docking methods" 7 (7): 64-70, 2002
3 Besl, P. J., "Three-dimensional object recognition" 17 (17): 75-145, 1985
4 Connolly, M., "Shape complementarity at the Hemoglobin ${\alpha}$1${\beta}$1 Subunit Interface" 25 : 1229-1247, 1986
5 Norel, R., "Shape complementarity at protein-protein interfaces" 34 (34): 933-940, 1994
6 Voruganti, H. K., "Segmentation and parameterization of molecular surfaces for docking" 3 (3): 178-192, 2009
7 Sanner, M., "Reduced surface: An efficient way to compute molecular surfaces" 38 (38): 305-320, 1996
8 Ritchie, D. W., "Recent progress and future directions in protein-protein docking" 9 (9): 1-15, 2008
9 Huang, Q.-X., "Reassembling fractured objects by geometric matching" 25 (25): 569-578, 2006
10 Mitchell, J., "Rapid atomic density methods for molecular shape characterization" 19 (19): 325-330, 2001
11 Hwang, H., "Protein-protein docking benchmark version 4.0" 78 (78): 3111-3114, 2010
12 Via, A., "Protein surface similarities: a survey of methods to describe and compare protein surfaces" 57 (57): 1970-1977, 2000
13 Trosset, J., "Prodock: Software package for protein modeling and docking" 20 (20): 412-427, 1999
14 Halperin, I., "Principles of docking: An overview of search algorithms and a guide to scoring functions" 47 : 409-443, 2002
15 Sternberg, M., "Predictive docking of protein-protein and protein-DNA complexes" 8 (8): 250-256, 1998
16 Smith, G., "Prediction of protein-protein interactions by docking methods" 12 (12): 28-35, 2002
17 Lenhof, H., "Parallel protein puzzle: A new suite of protein docking tools" 97 : 182-191, 1997
18 Li, X., "Pairwise geometric matching for large-scale object retrieval" 5153-5161, 2015
19 Li, H., "Object matching with a locally affineinvariant constraint" IEEE 1641-1648, 2010
20 Walls, P., "New algorithm to model protein-protein recognition based on surface complementarity. Applications to antibodyantigen docking" 228 (228): 277-297, 1992
21 Connolly, M., "Molecular surfaces: A review, Network Science 14"
22 Lin, S., "Molecular surface representations by sparse critical points" 18 (18): 94-101, 1994
23 Katchalski-Katzir, E., "Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques" 89 (89): 2195-2199, 1992
24 Jones, G., "Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation" 245 (245): 43-53, 1995
25 Wolfson, H.J., "Model-based object recognition by geometric hashing" 526-536, 1990
26 Vakser, I., "Main-chain complementarity in protein-protein recognition" 9 (9): 741-744, 1996
27 Liu, M., "MCDOCK: A Monte Carlo simulation approach to the molecular docking problem" 13 (13): 435-451, 1999
28 Kozakov, D., "How good is automated protein docking?" 81 (81): 2159-2166, 2013
29 Lamdan, Y., "Geometric hashing: a general and efficient modelbased recognition scheme" 238-249, 1998
30 Huang, S.-Y., "Exploring the potential of global protein-protein docking: an overview and critical assessment of current programs for automatic ab initio docking" 20 (20): 969-977, 2015
31 Heifetz, A., "Electrostatics in proteinprotein docking" 11 (11): 571-587, 2002
32 Duhovny, D., "Efficient unbound docking of rigid molecules" 185-200, 2002
33 Chen, R., "Docking unbound proteins using shape complementarity, desolvation, and electrostatics" 47 (47): 281-294, 2002
34 Jones, G., "Development and validation of a genetic algorithm for flexible docking" 267 (267): 727-748, 1997
35 Vajda, S., "Convergence and combination of methods in protein-protein docking" 19 (19): 164-170, 2009
36 Shentu, Z., "Context shapes: Efficient complementary shape matching for protein-protein docking" 70 (70): 1056-1073, 2008
37 Elcock, A., "Computer simulation of protein-protein interactions" 105 (105): 1504-1518, 2001
38 Wodak, S., "Computer analysis of protein-protein interaction" 124 (124): 323-342, 1978
39 Kim, D., "Betadock: Shape-priority docking method based on beta-complex" 29 (29): 219-242, 2011
40 Mendez, R., "Assessment of blind predictions of protein-protein interactions: Current status of docking methods" 52 (52): 51-67, 2003
41 Zacharias, M., "Accounting for conformational changes during protein-protein docking" 20 (20): 180-186, 2010
42 Fischer, D., "A geometry-based suite of moleculardocking processes" 248 (248): 459-477, 1995
43 Kuntz, I., "A geometric approach to macromolecule-ligand interactions" 161 (161): 269-288, 1982