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      KCI등재 SCOPUS SCIE

      Genetic diversity and population structure of the Korean field mouse(Apodumus peninsulae) in South Korea: from 17 previously and newly developed microsatellite markers

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      https://www.riss.kr/link?id=A104428631

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      다국어 초록 (Multilingual Abstract)

      To provide more reliable genetic information on species and minimize experimental errors, biologists increase the number of genetic markers available and then carefully select optimal markers from a large candidate pool. We developed nine novel microsatellite markers from the Korean field mouse (Apodemus peninsulae), which is one of the most dominant forest animals in South Korea. The mean observed and expected heterozygosities across nine markers were 0.65 and 0.73, respectively,with an average polymorphic information content of 0.70.
      Using 17 microsatellite markers (nine polymorphic markers in this study, in combination with eight previously reported for the species), we conducted genetic analysis on the animals from six sampling locations. These locations are divided into the eastern (EAST) and the western (WEST) sides of the Taebaek mountain ranges in South Korea. Genetic diversity was high at both groups, with the mean expected heterozygosity of 0.77in EAST and 0.78 in WEST. However, we did not observe strong evidence of genetic divergence between two groups.
      Future genetic research with more samples incorporating ecological study may clarify population structure in the species and the hypothesis of the mountains discontinuity of gene flow.
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      To provide more reliable genetic information on species and minimize experimental errors, biologists increase the number of genetic markers available and then carefully select optimal markers from a large candidate pool. We developed nine novel micros...

      To provide more reliable genetic information on species and minimize experimental errors, biologists increase the number of genetic markers available and then carefully select optimal markers from a large candidate pool. We developed nine novel microsatellite markers from the Korean field mouse (Apodemus peninsulae), which is one of the most dominant forest animals in South Korea. The mean observed and expected heterozygosities across nine markers were 0.65 and 0.73, respectively,with an average polymorphic information content of 0.70.
      Using 17 microsatellite markers (nine polymorphic markers in this study, in combination with eight previously reported for the species), we conducted genetic analysis on the animals from six sampling locations. These locations are divided into the eastern (EAST) and the western (WEST) sides of the Taebaek mountain ranges in South Korea. Genetic diversity was high at both groups, with the mean expected heterozygosity of 0.77in EAST and 0.78 in WEST. However, we did not observe strong evidence of genetic divergence between two groups.
      Future genetic research with more samples incorporating ecological study may clarify population structure in the species and the hypothesis of the mountains discontinuity of gene flow.

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      참고문헌 (Reference)

      1 Don RH, "Touchdown’ PCR to circumvent spurious priming during gene amplification" 19 : 4008-, 1991

      2 Kartavtseva IV, "The B-chromosome system of theKorean field mouse Apodemus peninsulae in the Russain Far East" 4 : 21-29, 2000

      3 Baek LJ, "Soochong virus: An antigenically and genetically distinct hantavirus isolated from Apodemus peninsulae in Korea" WILEY-LISS 78 : 290-297, 2006

      4 Kalinowski ST, "Revising how the computer program Cervus accommodates genotyping error increases success in paternity assignment" 16 : 1006-1019, 2007

      5 Koh HS, "Morphometric variation in three subspecies of Korean field mice, Apodemus peninsulae Thomas (Mammalia: Rodentia), in China and Korea" 12 : 203-210, 1996

      6 Ellegren H, "Microsatellites: simple sequences with complex evolution" 5 : 435-445, 2004

      7 Selkoe KA, "Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers" 9 : 615-629, 2006

      8 DeWoody JA, "Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals" 56 : 461-473, 2000

      9 Wu H, "Microsatellite DNA markers for comparative phylogeography analysis in the Korean field mouse (Apodemus peninsulae) and large-eared field mouse (Apodemus latronum)" 1 : 1-3, 2009

      10 Wilson DE, "Mammal species of the world: a taxonomic and geographic reference. Vol. 2" Johns Hopkins University Press 2005

      1 Don RH, "Touchdown’ PCR to circumvent spurious priming during gene amplification" 19 : 4008-, 1991

      2 Kartavtseva IV, "The B-chromosome system of theKorean field mouse Apodemus peninsulae in the Russain Far East" 4 : 21-29, 2000

      3 Baek LJ, "Soochong virus: An antigenically and genetically distinct hantavirus isolated from Apodemus peninsulae in Korea" WILEY-LISS 78 : 290-297, 2006

      4 Kalinowski ST, "Revising how the computer program Cervus accommodates genotyping error increases success in paternity assignment" 16 : 1006-1019, 2007

      5 Koh HS, "Morphometric variation in three subspecies of Korean field mice, Apodemus peninsulae Thomas (Mammalia: Rodentia), in China and Korea" 12 : 203-210, 1996

      6 Ellegren H, "Microsatellites: simple sequences with complex evolution" 5 : 435-445, 2004

      7 Selkoe KA, "Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers" 9 : 615-629, 2006

      8 DeWoody JA, "Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals" 56 : 461-473, 2000

      9 Wu H, "Microsatellite DNA markers for comparative phylogeography analysis in the Korean field mouse (Apodemus peninsulae) and large-eared field mouse (Apodemus latronum)" 1 : 1-3, 2009

      10 Wilson DE, "Mammal species of the world: a taxonomic and geographic reference. Vol. 2" Johns Hopkins University Press 2005

      11 Wooten MC, "Large mammals are genetically less variable" 39 : 210-212, 1985

      12 Cuc LM, "Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)" 8 : 55-, 2008

      13 An J, "Isolation and characterization of 15 microsatellite loci in the Korean goral (Nemorhaedus caudatus)" BLACKWELL PUBLISHING 5 : 421-423, 2005

      14 Pritchard JK, "Inference of population structure using multilocus genotype data. Genetics 155:945-959.Rice WR (1989) Analyzing tables of statistical tests" 43 : 223-225, 1989

      15 Eo SH, "Genetic diversity in birds is associated with body mass and habitat type" 2011

      16 Lewis PO, "Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c)"

      17 Rousset F, "Genepop’007: a complete re-implementation of the GenePop software for Windows and Linux" 8 : 103-106, 2008

      18 Eo SH, "Effects of topography on dispersal of black-billed magpie Pica pica sericea revealed by population genetic analysis" 20 : 43-47, 2002

      19 Eo SH, "Development of polymorphic microsatellite DNA markers from the Korean field mouse, Apodemus peninsulae" SPRINGER 10 : 1923-1925, 2009

      20 "Cross-species amplification of Bovidae microsatellites and low diversity of the endangered Korean goral" 95 : 521-525, 200411

      21 Serizawa K, "A spatial aspect on mitochondrial DNA genealogy in Apodemus peninsulae from East Asia" 40 : 149-161, 2002

      22 Yashina L, "A newly discovered variant of a Hantavirus in Apodemus peninsulae, far Eastern Russia" 7 : 912-914, 2001

      23 Kim KS, "A core set of microsatellite markers for western corn rootworm (Coleoptera: Chrysomelidae) population genetics studies" 37 : 293-300, 2008

      24 Jackson AP, "A cophylogenetic perspective of RNA-virus evolution" 21 : 45-57, 2004

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2012-05-07 학술지명변경 한글명 : 한국유전학회지 -> Genes & Genomics KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-04-14 학술지명변경 외국어명 : Korean Journal of Genetics -> Genes and Genomics KCI등재
      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2002-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      1999-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
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