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      KCI등재 SCIE SCOPUS

      Targeting Acetate Kinase: Inhibitors as Potential Bacteriostatics = Targeting Acetate Kinase: Inhibitors as Potential Bacteriostatics

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      https://www.riss.kr/link?id=A99872919

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      다국어 초록 (Multilingual Abstract)

      Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of mole...

      Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of molecular modeling methods. In the next stage, by considering the structure of the catalytic intermediate, trifluoroethanol (TFE) and trifluoroethyl butyrate were proposed as potential inhibitors of the enzyme. The putative binding mode of these compounds was studied with the use of a docking program, which revealed that they can fit well into the enzyme. To study the role of these potential enzyme inhibitors in the metabolic pathway of E. coli, their effects on the growth of this bacterium were studied. The results showed that growth was considerably reduced in the presence of these inhibitors. Changes in the profile of the metabolic products were studied by proton nuclear magnetic resonance spectroscopy. Remarkable changes were observed in the quantity of acetate, but other products were less altered. In this study, inhibition of growth by the two inhibitors as reflected by a change in the metabolism of E. coli suggests the potential use of these compounds (particularly TFE) as bacteriostatic agents.

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      참고문헌 (Reference)

      1 Buss KA, "Urokinase: structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases" 183 : 680-686, 2001

      2 Eswar N, "Tools for comparative protein structure modeling and analysis" 13 : 3375-3380, 2003

      3 Nemethy G, "Theoretical studies of protein conformation by means of energy computations" 4 : 3189-3197, 1990

      4 Hurley JH, "The sugar kinase/heat shock protein 70/ actin superfamily: implications of conserved structure for mechanism" 25 : 137-162, 1996

      5 Yang YT, "The effects of feed and intracellular pyruvate levels on the redistribution of metabolic fluxes in Escherichia coli" 3 : 115-123, 2001

      6 McCammon JA, "Target flexibility in molecular recognition" 347 : 221-224, 1990

      7 Gorrell A, "Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila" 39 : 10731-10742, 2004

      8 Lawrence SH, "Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila" 188 : 1155-1158, 2006

      9 Miles RD, "Site-directed mutational analysis of active site residue in the acetate kinase from Methanosarcina thermophila" 276 : 45059-45064, 2001

      10 Iuchi S, "Purification and phosphorylation of the Arc regulatory components of Escherichia coli" 174 : 5617-5623, 1992

      1 Buss KA, "Urokinase: structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases" 183 : 680-686, 2001

      2 Eswar N, "Tools for comparative protein structure modeling and analysis" 13 : 3375-3380, 2003

      3 Nemethy G, "Theoretical studies of protein conformation by means of energy computations" 4 : 3189-3197, 1990

      4 Hurley JH, "The sugar kinase/heat shock protein 70/ actin superfamily: implications of conserved structure for mechanism" 25 : 137-162, 1996

      5 Yang YT, "The effects of feed and intracellular pyruvate levels on the redistribution of metabolic fluxes in Escherichia coli" 3 : 115-123, 2001

      6 McCammon JA, "Target flexibility in molecular recognition" 347 : 221-224, 1990

      7 Gorrell A, "Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila" 39 : 10731-10742, 2004

      8 Lawrence SH, "Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila" 188 : 1155-1158, 2006

      9 Miles RD, "Site-directed mutational analysis of active site residue in the acetate kinase from Methanosarcina thermophila" 276 : 45059-45064, 2001

      10 Iuchi S, "Purification and phosphorylation of the Arc regulatory components of Escherichia coli" 174 : 5617-5623, 1992

      11 Bock AK, "Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritime" 181 : 1861-1867, 1999

      12 Aceti DJ, "Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila: evidence for regulation of synthesis" 263 : 15444-15448, 1988

      13 Fox DK, "Phosphate transfer between acetate kinase and enzyme of the bacterial phosphotransferase system" 261 : 13498-13503, 2000

      14 Veit A, "Pathway identification combining metabolic flux and functional genomics analyses: acetate and propionate activation by Corynebacterium glutamicum" 140 : 75-83, 2009

      15 Laskowski RA, "PROCHECK: a program to check the stereochemical quality of protein structures" 26 : 283-291, 1993

      16 Lipmann F, "Metabolic generation and utilization of phosphate bond energy" 1 : 99-162, 1941

      17 Wang Q, "Metabolic flux control at the pyruvate node in an anaerobic Escherichia coli atrain with an active pyruvate dehydrogenase" 76 : 2107-2114, 2010

      18 Wallace AC, "LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions" 8 : 127-134, 1996

      19 Vieth M, "Kinomics - structural biology and chemogenomics of kinase inhibitors and targets" 1697 : 243-257, 2004

      20 Singh-Wissmann K, "Identification of essential glutamates in the acetate kinase from Methanosarcina thermophila" 180 : 1129-1134, 1998

      21 Singh-Wissmann K, "Identification of essential arginines in the acetate kinase from Methanosarcina thermophila" 39 : 3671-3677, 2000

      22 Ferry JG, "Enzymology of the fermentation of acetate to methane by Methanosarcina thermophila" 6 : 25-35, 1997

      23 Lipmann F, "Enzymatic synthesis of acetyl phosphate" 155 : 55-57, 1944

      24 Nizam SA, "Effects of arcA and arcB genes knockout on the metabolism in Escherichia coli under aerobic condition" 44 : 240-250, 2008

      25 Yang YT, "Effect of inactivation of nuo and ackA-pta on redistribution o f metab olic f luxes in Escherichia coli" 65 : 291-297, 1999

      26 Sali A, "Comparative protein modeling by satisfaction of spatial restraints" 234 : 779-815, 1993

      27 Larkin MA, "ClustalW and ClustalX version" 23 : 2947-2948, 2007

      28 Ingram-Smith C, "Characterization of acetate binding pocket in the Methanosarcina thermophila acetate kinase" 187 : 2386-2394, 2005

      29 Stivala A, "Automatic generation of protein structure cartoons with Pro-origami" 27 : 3315-3316, 2011

      30 Trott O, "AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading" 31 : 455-461, 2010

      31 Kiswar Y, "Anaerobic fermentation balance of Escherichia coli as observed by in vivo nuclear magnetic resonance spectroscopy" 171 : 6213-6217, 1989

      32 Ingram-Smith C, "Acetate kinase: not just a bacterial enzyme" 14 : 249-253, 2006

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
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      2010-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-04-04 학술지명변경 한글명 : -> Journal of Microbiology and Biotechnology KCI등재
      2006-03-30 학술지등록 한글명 :
      외국어명 : Journal of Microbiology and Biotechnology
      KCI등재
      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-07-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1999-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.59 0.33 1.17
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.91 0.78 0.472 0.08
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