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    SCIE SCOPUS KCI등재

    Targeting Acetate Kinase: Inhibitors as Potential Bacteriostatics = Targeting Acetate Kinase: Inhibitors as Potential Bacteriostatics

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    https://www.riss.kr/link?id=A99872919

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    다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

    Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of molecular modeling methods. In the next stage, by considering the structure of the catalytic intermediate, trifluoroethanol (TFE) and trifluoroethyl butyrate were proposed as potential inhibitors of the enzyme. The putative binding mode of these compounds was studied with the use of a docking program, which revealed that they can fit well into the enzyme. To study the role of these potential enzyme inhibitors in the metabolic pathway of E. coli, their effects on the growth of this bacterium were studied. The results showed that growth was considerably reduced in the presence of these inhibitors. Changes in the profile of the metabolic products were studied by proton nuclear magnetic resonance spectroscopy. Remarkable changes were observed in the quantity of acetate, but other products were less altered. In this study, inhibition of growth by the two inhibitors as reflected by a change in the metabolism of E. coli suggests the potential use of these compounds (particularly TFE) as bacteriostatic agents.
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    Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of mole...

    Despite the importance of acetate kinase in the metabolism of bacteria, limited structural studies have been carried out on this enzyme. In this study, a three-dimensional structure of the Escherichia coli acetate kinase was constructed by use of molecular modeling methods. In the next stage, by considering the structure of the catalytic intermediate, trifluoroethanol (TFE) and trifluoroethyl butyrate were proposed as potential inhibitors of the enzyme. The putative binding mode of these compounds was studied with the use of a docking program, which revealed that they can fit well into the enzyme. To study the role of these potential enzyme inhibitors in the metabolic pathway of E. coli, their effects on the growth of this bacterium were studied. The results showed that growth was considerably reduced in the presence of these inhibitors. Changes in the profile of the metabolic products were studied by proton nuclear magnetic resonance spectroscopy. Remarkable changes were observed in the quantity of acetate, but other products were less altered. In this study, inhibition of growth by the two inhibitors as reflected by a change in the metabolism of E. coli suggests the potential use of these compounds (particularly TFE) as bacteriostatic agents.

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    참고문헌 (Reference)

    1 Buss KA, "Urokinase: structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases" 183 : 680-686, 2001

    2 Eswar N, "Tools for comparative protein structure modeling and analysis" 13 : 3375-3380, 2003

    3 Nemethy G, "Theoretical studies of protein conformation by means of energy computations" 4 : 3189-3197, 1990

    4 Hurley JH, "The sugar kinase/heat shock protein 70/ actin superfamily: implications of conserved structure for mechanism" 25 : 137-162, 1996

    5 Yang YT, "The effects of feed and intracellular pyruvate levels on the redistribution of metabolic fluxes in Escherichia coli" 3 : 115-123, 2001

    6 McCammon JA, "Target flexibility in molecular recognition" 347 : 221-224, 1990

    7 Gorrell A, "Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila" 39 : 10731-10742, 2004

    8 Lawrence SH, "Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila" 188 : 1155-1158, 2006

    9 Miles RD, "Site-directed mutational analysis of active site residue in the acetate kinase from Methanosarcina thermophila" 276 : 45059-45064, 2001

    10 Iuchi S, "Purification and phosphorylation of the Arc regulatory components of Escherichia coli" 174 : 5617-5623, 1992

    1 Buss KA, "Urokinase: structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases" 183 : 680-686, 2001

    2 Eswar N, "Tools for comparative protein structure modeling and analysis" 13 : 3375-3380, 2003

    3 Nemethy G, "Theoretical studies of protein conformation by means of energy computations" 4 : 3189-3197, 1990

    4 Hurley JH, "The sugar kinase/heat shock protein 70/ actin superfamily: implications of conserved structure for mechanism" 25 : 137-162, 1996

    5 Yang YT, "The effects of feed and intracellular pyruvate levels on the redistribution of metabolic fluxes in Escherichia coli" 3 : 115-123, 2001

    6 McCammon JA, "Target flexibility in molecular recognition" 347 : 221-224, 1990

    7 Gorrell A, "Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila" 39 : 10731-10742, 2004

    8 Lawrence SH, "Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila" 188 : 1155-1158, 2006

    9 Miles RD, "Site-directed mutational analysis of active site residue in the acetate kinase from Methanosarcina thermophila" 276 : 45059-45064, 2001

    10 Iuchi S, "Purification and phosphorylation of the Arc regulatory components of Escherichia coli" 174 : 5617-5623, 1992

    11 Bock AK, "Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritime" 181 : 1861-1867, 1999

    12 Aceti DJ, "Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila: evidence for regulation of synthesis" 263 : 15444-15448, 1988

    13 Fox DK, "Phosphate transfer between acetate kinase and enzyme of the bacterial phosphotransferase system" 261 : 13498-13503, 2000

    14 Veit A, "Pathway identification combining metabolic flux and functional genomics analyses: acetate and propionate activation by Corynebacterium glutamicum" 140 : 75-83, 2009

    15 Laskowski RA, "PROCHECK: a program to check the stereochemical quality of protein structures" 26 : 283-291, 1993

    16 Lipmann F, "Metabolic generation and utilization of phosphate bond energy" 1 : 99-162, 1941

    17 Wang Q, "Metabolic flux control at the pyruvate node in an anaerobic Escherichia coli atrain with an active pyruvate dehydrogenase" 76 : 2107-2114, 2010

    18 Wallace AC, "LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions" 8 : 127-134, 1996

    19 Vieth M, "Kinomics - structural biology and chemogenomics of kinase inhibitors and targets" 1697 : 243-257, 2004

    20 Singh-Wissmann K, "Identification of essential glutamates in the acetate kinase from Methanosarcina thermophila" 180 : 1129-1134, 1998

    21 Singh-Wissmann K, "Identification of essential arginines in the acetate kinase from Methanosarcina thermophila" 39 : 3671-3677, 2000

    22 Ferry JG, "Enzymology of the fermentation of acetate to methane by Methanosarcina thermophila" 6 : 25-35, 1997

    23 Lipmann F, "Enzymatic synthesis of acetyl phosphate" 155 : 55-57, 1944

    24 Nizam SA, "Effects of arcA and arcB genes knockout on the metabolism in Escherichia coli under aerobic condition" 44 : 240-250, 2008

    25 Yang YT, "Effect of inactivation of nuo and ackA-pta on redistribution o f metab olic f luxes in Escherichia coli" 65 : 291-297, 1999

    26 Sali A, "Comparative protein modeling by satisfaction of spatial restraints" 234 : 779-815, 1993

    27 Larkin MA, "ClustalW and ClustalX version" 23 : 2947-2948, 2007

    28 Ingram-Smith C, "Characterization of acetate binding pocket in the Methanosarcina thermophila acetate kinase" 187 : 2386-2394, 2005

    29 Stivala A, "Automatic generation of protein structure cartoons with Pro-origami" 27 : 3315-3316, 2011

    30 Trott O, "AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading" 31 : 455-461, 2010

    31 Kiswar Y, "Anaerobic fermentation balance of Escherichia coli as observed by in vivo nuclear magnetic resonance spectroscopy" 171 : 6213-6217, 1989

    32 Ingram-Smith C, "Acetate kinase: not just a bacterial enzyme" 14 : 249-253, 2006

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