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      DNA Polymorphism and Assessments of Genetic Relationships in genus Zoysia Based on Simple Sequence Repeat Markers

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      https://www.riss.kr/link?id=A100414054

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      국문 초록 (Abstract)

      한국에서 채집한 잔디속(genus Zoysia) 식물 종의 유전적 변이를 단순 서열 반복(Inter-Simple Sequence Repeat Markers, ISSR) 마커 시스템으로 조사하였다. 8개의 ISSR 시발체를 이용한 중합효소 사슬 증폭반...

      한국에서 채집한 잔디속(genus Zoysia) 식물 종의 유전적 변이를 단순 서열 반복(Inter-Simple Sequence Repeat Markers, ISSR) 마커 시스템으로 조사하였다. 8개의 ISSR 시발체를 이용한 중합효소 사슬 증폭반응에서 86개의 분절의 증폭물을 얻었으며 이 중 76(87.1%)개 분절이 다형성을 나타내었다. ISSR 마커 시스템에서 다형성 정보지수(PIC)는 0.848이었다. 다형성 대립유전자좌위의 퍼센트(Pp)는 41.2%에서 44.7%까지 나타내었다. 네이(Nei)의 유전자 다양성(H)은 0.149에서 0.186까지 이며 평균은 0.170이었다. 샤논(Shannon)의 정보 지수(I)의 평균값은 0.250이었다. 대립유전자좌위에 근거하여 전체 변이에서 종 간 차이를 나타내는 변이의 몫(GST)은 0.601였다. 이는 전체변이의 약 60.1%는 종 간에 있음을 의미한다. 따라서 변이의 약 39.9%는 종 내에 있었다. GST에 근거한 유전자 흐름(이동)은 잔디속 간에는 대단히 낮았다(Nm = 0.332). 계통도는 3개의 뚜렷한 분지군으로 분리되었다. 왕잔디(Zoysia macrostachya)와 금잔디(Z. tenuifolia) 분지군, 갯잔디(Z. sinica) 단독 분지군, 잔디(Z .japonica) 단독 분지군이었다. 결론적으로 잔디속 식물에 대한 ISSR 분석은 유전적 변이를 탐지하는데 유용하며, 종을 구분하는 유전자형의 대한 식별력을 주었다.

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      다국어 초록 (Multilingual Abstract)

      The genetic variability of four species of the genus Zoysia collected from South Korea was analyzed using an inter-simple sequence repeat (ISSR) marker system. Polymerase chain reactions (PCR) with eight ISSR primers generated 86 amplicons, 76 (87.1%)...

      The genetic variability of four species of the genus Zoysia collected from South Korea was analyzed using an inter-simple sequence repeat (ISSR) marker system. Polymerase chain reactions (PCR) with eight ISSR primers generated 86 amplicons, 76 (87.1%) of which were polymorphisms. The polymorphism information content (PIC) value of the ISSR marker system was 0.848. The percentage of polymorphic loci (Pp) ranged from 41.2% to 44.7%. Nei’s gene diversity (H) ranged from 0.149 to 0.186, with an average overall value of 0.170. The mean of Shannon’s information index (I) value was 0.250. Total genetic diversity values (HT) varied between 0.356 (ISSR-1) and 0.418 (ISSR-16), for an average overall polymorphic loci of 0.345. Interlocus variation in within-species genetic diversity (HS) was low (0.170). On a per-locus basis, the proportion of total genetic variation due to differences among species (GST) was 0.601. This indicated that about 60.1% of the total variation was among species. Thus, about 39.9 of genetic variation was within species. The estimate of gene flow, based on GST, was very low among species of the genus Zoysia (Nm = 0.332). The phylogenic tree showed three distinct groups: Z. macrostachya and Z. tenuifolia clades and other species were formed the separated clusters. In conclusion, the ISSR assay was useful for detecting genetic variation in the genus Zoysia, and its discriminatory power was comparable to that of other genotyping tools.

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      목차 (Table of Contents)

      • Introduction
      • Materials and Methods
      • Results
      • Discussion
      • References
      • Introduction
      • Materials and Methods
      • Results
      • Discussion
      • References
      • 초록
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      참고문헌 (Reference)

      1 Engelke, M., "Turfgrass Biology, Genetics, and Breeding" John Wiley & Sons 271-286, 2003

      2 Stewart, A., "The potential for domestication and seed propagation of native New Zealand grasses for turf" 277-284, 2003

      3 Loch, D. S., "Taxonomy, distribution, and ecology of Zoysia macrantha Desv., an Australian native species with turf breeding potential" 10 : 593-599, 2005

      4 Anderson, S. J., "Taxonomy of Zoysia(Poaceae) : Morphological and molecular variation" Texas A&M Univ. 2000

      5 Hu, J., "Target region amplification polymorphism : a novel marker technique for plant genotyping" 21 : 289-294, 2003

      6 Collard, B. C. Y., "Start codon targeted(SCoT)polymorphism : a simple, novel DNA marker technique for generating gene-targeted markers in plants" 27 : 86-93, 2009

      7 Lubberstedt, T., "Relationships among early Europe maize inbreds : IV. Genetic diversity revealed with AFLP markers and comparison with RFLP, RAPD, and pedigree data" 40 : 783-791, 2000

      8 Slatkin, M., "Rare alleles as indicators of gene flow" 39 : 53-65, 1985

      9 Jin, H., "Progress on genetic diversity of Zoysia japonica Steud" 26 : 91-95, 2004

      10 Hamrick, J. L., "Plant Population Genetics, Breeding and Genetic Resources" Sinauer Sunderland 304-319, 1989

      1 Engelke, M., "Turfgrass Biology, Genetics, and Breeding" John Wiley & Sons 271-286, 2003

      2 Stewart, A., "The potential for domestication and seed propagation of native New Zealand grasses for turf" 277-284, 2003

      3 Loch, D. S., "Taxonomy, distribution, and ecology of Zoysia macrantha Desv., an Australian native species with turf breeding potential" 10 : 593-599, 2005

      4 Anderson, S. J., "Taxonomy of Zoysia(Poaceae) : Morphological and molecular variation" Texas A&M Univ. 2000

      5 Hu, J., "Target region amplification polymorphism : a novel marker technique for plant genotyping" 21 : 289-294, 2003

      6 Collard, B. C. Y., "Start codon targeted(SCoT)polymorphism : a simple, novel DNA marker technique for generating gene-targeted markers in plants" 27 : 86-93, 2009

      7 Lubberstedt, T., "Relationships among early Europe maize inbreds : IV. Genetic diversity revealed with AFLP markers and comparison with RFLP, RAPD, and pedigree data" 40 : 783-791, 2000

      8 Slatkin, M., "Rare alleles as indicators of gene flow" 39 : 53-65, 1985

      9 Jin, H., "Progress on genetic diversity of Zoysia japonica Steud" 26 : 91-95, 2004

      10 Hamrick, J. L., "Plant Population Genetics, Breeding and Genetic Resources" Sinauer Sunderland 304-319, 1989

      11 Bayer, R. J., "Patterns of clonal diversity in the Antennaria rosea(Asteraceae)polyploid agamic complex" 77 : 1313-1319, 1990

      12 Yeh, F. C., "POPGENE Version 1. 31, Microsoft Windows-based Freeware for Population Genetic Analysis" University of Alberta 1999

      13 Shete, S., "On estimating the heterozygosity and polymorphism information content value" 57 : 265-271, 2000

      14 Nei, M., "Mathematical model for studying genetical variation in terms of restriction endonucleases" 74 : 5267-5273, 1979

      15 Tamura, K., "MEGA5 : Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods" 28 : 2731-2739, 2011

      16 Kunjupillai Vijayan, "Inter Simple Sequence Repeat (ISSR) Polymorphism and Its Application in Mulberry Genome Analysis" 한국잠사학회 10 (10): 79-86, 2005

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      18 Zietkiewicz, E., "Genome fingerprinting by simple sequence repeat(SSR)-anchored polymerase chain reaction amplification" 20 : 176-183, 1994

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      21 Li, Y., "Genetic differentiation in Zoysia sinica populations revealed by RAPD markers" 24 : 345-349, 2004

      22 McDermott, J. M., "Gene flow in plant pathosystems" 31 : 353-373, 1993

      23 Hamrick, J. L., "Factors influencing levels of genetic diversity in woody plant species" 6 : 95-124, 1992

      24 Nei, M., "F-statistics and analysis of gene diversity in subdivided populations" 41 : 225-233, 1977

      25 Loveless, M. D., "Ecological determinants of genetic structure in plant populations" 15 : 65-95, 1984

      26 Paul, S. P., "Diversity and genetic differentiation among populations of Indian and Kenyan tea(Camellia sinensis(L. )O. Kuntze)revealed by AFLP markers" 94 : 255-263, 1997

      27 Choi, J. S., "Distribution of native zoysiagrasses(Zoysia spp. )in the south and west coastal regions of Korea and classification using morphological characteristics" 38 : 399-407, 1997

      28 Ledig, F. T., "Conservation Biology" Sinauer Sunderland 77-104, 1986

      29 Bowman, K. D., "Comments on the distribution of indices of diversity" 3 : 315-359, 1971

      30 Choi, J. S., "Classification of zoysiagrasses(Zoysia spp. )native to the southwest coastal regions of Korea using RAPDs" 38 : 789-795, 1997

      31 Forbes, I. Jr., "Chromosome numbers and hybrids in Zoysia" 44 : 194-199, 1952

      32 Le Thierry d’Enneequin, M., "Assessment of genetic relationships between Setaria italica and its wild relative S, viridis using AFLP markers" 100 : 1061-1066, 2000

      33 Nei, M., "Analysis of gene diversity in subdivided populations" 73 : 3321-3323, 1973

      34 Yaneshita, M., "Allotetraploidy of Zoysia species with 2n=40 based on a RFLP genetic map" 98 : 751-756, 1999

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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.37 0.37 0.42
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.43 0.43 0.774 0.09
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