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      Helicobacter pylori apo-Fur Regulation Appears Unconserved Across Species

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      https://www.riss.kr/link?id=A103763103

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      다국어 초록 (Multilingual Abstract)

      The Ferric Uptake Regulator (Fur) is a transcriptional regulator that is conserved across a broad number of bacterial species and has been shown to regulate expression of iron uptake and storage genes. Additionally, Fur has been shown to be an importa...

      The Ferric Uptake Regulator (Fur) is a transcriptional regulator that is conserved across a broad number of bacterial species and has been shown to regulate expression of iron uptake and storage genes. Additionally, Fur has been shown to be an important colonization factor of the gastric pathogen Helicobacter pylori. In H. pylori, Fur-dependent regulation appears to be unique in that Fur is able to act as a transcriptional repressor when bound to iron as well as in its iron free (apo) form. To date, apo-regulation has not been identified in any other bacterium. To determine whether Fur from other species has the capacity for aporegulation, we investigated the ability of Fur from Escherichia coli, Campylobacter jejuni, Desulfovibrio vulgaris Hildenborough, Pseudomonas aeruginosa, and Vibrio cholerae to complement both iron-bound and apo-Fur regulation within the context of a H. pylori fur mutant. We found that while some Fur species (E. coli, C. jejuni, and V. cholerae) complemented iron-bound regulation, apo-regulation was unable to be complemented by any of the examined species. These data suggest that despite the conservation among bacterial Fur proteins, H. pylori Fur contains unique structure/function features that make it novel in comparison to Fur from other species.

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      참고문헌 (Reference)

      1 Ernst, F.D., "Transcriptional profiling of Helicobacter pylori Fur- and ironregulated gene expression" 151 : 533-546, 2005

      2 Fiorini, F., "Transcription of the Listeria monocytogenes fri gene is growth-phase dependent and is repressed directly by Fur, the ferric uptake regulator" 410 : 113-121, 2008

      3 Carpenter, B.M., "This is not your mother's repressor: the complex role of fur in pathogenesis" 77 : 2590-2601, 2009

      4 van Vliet, A.H., "The role of the Ferric Uptake Regulator (Fur) in regulation of Helicobacter pylori iron uptake" 7 : 237-244, 2002

      5 Gutteridge, J.M., "The iron paradox of heart and lungs and its implications for acute lung injury" 34 : 439-443, 2001

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      7 Heidelberg, J.F., "The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough" 22 : 554-559, 2004

      8 Bereswill, S., "The ferric uptake regulator (Fur) homologue of Helicobacter pylori: functional analysis of the coding gene and controlled production of the recombinant protein in Escherichia coli" 188 : 31-40, 1999

      9 Wang, G., "The diverse antioxidant systems of Helicobacter pylori" 61 : 847-860, 2006

      10 Baltrus, D.A., "The complete genome sequence of Helicobacter pylori strain G27" 191 : 447-448, 2009

      1 Ernst, F.D., "Transcriptional profiling of Helicobacter pylori Fur- and ironregulated gene expression" 151 : 533-546, 2005

      2 Fiorini, F., "Transcription of the Listeria monocytogenes fri gene is growth-phase dependent and is repressed directly by Fur, the ferric uptake regulator" 410 : 113-121, 2008

      3 Carpenter, B.M., "This is not your mother's repressor: the complex role of fur in pathogenesis" 77 : 2590-2601, 2009

      4 van Vliet, A.H., "The role of the Ferric Uptake Regulator (Fur) in regulation of Helicobacter pylori iron uptake" 7 : 237-244, 2002

      5 Gutteridge, J.M., "The iron paradox of heart and lungs and its implications for acute lung injury" 34 : 439-443, 2001

      6 Parkhill, J., "The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences" 403 : 665-668, 2000

      7 Heidelberg, J.F., "The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough" 22 : 554-559, 2004

      8 Bereswill, S., "The ferric uptake regulator (Fur) homologue of Helicobacter pylori: functional analysis of the coding gene and controlled production of the recombinant protein in Escherichia coli" 188 : 31-40, 1999

      9 Wang, G., "The diverse antioxidant systems of Helicobacter pylori" 61 : 847-860, 2006

      10 Baltrus, D.A., "The complete genome sequence of Helicobacter pylori strain G27" 191 : 447-448, 2009

      11 Bijlsma, J.J., "The Helicobacter pylori homologue of the ferric uptake regulator is involved in acid resistance" 70 : 606-611, 2002

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      16 Ochsner, U.A., "Role of the ferric uptake regulator of Pseudomonas aeruginosa in the regulation of siderophores and exotoxin A expression: purification and activity on iron-regulated promoters" 177 : 7194-7201, 1995

      17 Bury-Mone, S., "Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori" 53 : 623-638, 2004

      18 Bereswill, S., "Regulation of ferritinmediated cytoplasmic iron storage by the ferric uptake regulator homolog (Fur) of Helicobacter pylori" 182 : 5948-5953, 2000

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      20 de Lorenzo, V., "Operator sequences of the aerobactin operon of plasmid ColVK30 binding the ferric uptake regulation (fur) repressor" 169 : 2624-2630, 1987

      21 Carpenter, B., "Mutagenesis of conserved amino acids of Helicobacter pylori Fur reveals residues important for function" 2010

      22 Campanella, J.J., "MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences" 4 : 29-, 2003

      23 Ernst, F.D., "Ironresponsive regulation of the Helicobacter pylori iron-cofactored superoxide dismutase SodB is mediated by Fur" 187 : 3687-3692, 2005

      24 Delany, I., "Iron-dependent transcription of the frpB gene of Helicobacter pylori is controlled by the Fur repressor protein" 183 : 4932-4937, 2001

      25 Ratledge, C., "Iron metabolism in pathogenic bacteria" 54 : 881-941, 2000

      26 Gancz, H., "Iron and pH homeostasis intersect at the level of Fur regulation in the gastric pathogen Helicobacter pylori" 74 : 602-614, 2006

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      29 Delany, I., "In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori" 187 : 7703-7715, 2005

      30 Horsburgh, M.J., "In Staphylococcus aureus, fur is an interactive regulator with PerR, contributes to virulence, and is necessary for oxidative stress resistance through positive regulation of catalase and iron homeostasis" 183 : 468-475, 2001

      31 Wilderman, P.J., "Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis" 101 : 9792-9797, 2004

      32 Xiao, B., "Identification of small noncoding RNAs in Helicobacter pylori by a bioinformatics-based approach" 58 : 258-263, 2009

      33 Bijlsma, J.J., "Identification of loci essential for the growth of Helicobacter pylori under acidic conditions" 182 : 1566-1569, 2000

      34 Blaser,M.J., "Helicobacter pylori and gastric diseases" 316 : 1507-1510, 1998

      35 Merrell, D.S., "Growth phase-dependent response of Helicobacter pylori to iron starvation" 71 : 6510-6525, 2003

      36 Alm, R.A., "Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori" 397 : 176-180, 1999

      37 Perna, N.T., "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7" 409 : 529-533, 2001

      38 Horton, R.M., "Gene splicing by overlap extension" 217 : 270-279, 1993

      39 Thompson, L.J., "Gene expression profiling of Helicobacter pylori reveals a growth-phase-dependent switch in virulence gene expression" 71 : 2643-2655, 2003

      40 McArthur, K.E., "Gastric acid secretion, gastrin release, and gastric emptying in humans as affected by liquid meal temperature" 49 : 51-54, 1989

      41 Dubrac, S., "Fur positive regulation of iron superoxide dismutase in Escherichia coli: functional analysis of the sodB promoter" 182 : 3802-3808, 2000

      42 Carpenter, B.M., "Expanding the Helicobacter pylori genetic toolbox: modification of an endogenous plasmid for use as a transcriptional reporter and complementation vector" 73 : 7506-7514, 2007

      43 van Vliet, A.H., "Differential regulation of amidase- and formamidase-mediated ammonia production by the Helicobacter pylori fur repressor" 278 : 9052-9057, 2003

      44 Heidelberg, J.F., "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae" 406 : 477-483, 2000

      45 Kun Sun, "Cys-92, Cys-95, and the C-Terminal 12 Residues of the Vibrio harveyi Ferric Uptake Regulator (Fur) are Functionally Inessential" 한국미생물학회 46 (46): 670-680, 2008

      46 Sheikh, M.A., "Crystal structure of the Vibrio cholerae ferric uptake regulator (Fur) reveals insights into metal co-ordination" 72 : 1208-1220, 2009

      47 Ernst, J.F., "Constitutive expression of the iron-enterochelin and ferrichrome uptake systems in a mutant strain of Salmonella typhimurium" 135 : 928-934, 1978

      48 Stover, C.K., "Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen" 406 : 959-964, 2000

      49 Hantke,K., "Cloning of the repressor protein gene of ironregulated systems in Escherichia coli K12" 197 : 337-341, 1984

      50 Mey, A.R., "Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation" 73 : 5706-5719, 2005

      51 Holmes, K., "Campylobacter jejuni gene expression in response to iron limitation and the role of Fur" 151 : 243-257, 2005

      52 Andrews, S.C., "Bacterial iron homeostasis" 27 : 215-237, 2003

      53 Pohl, E., "Architecture of a protein central to iron homeostasis: crystal structure and spectroscopic analysis of the ferric uptake regulator" 47 : 903-915, 2003

      54 Litwin, C.M., "Analysis of the complexity of gene regulation by fur in Vibrio cholerae" 176 : 240-248, 1994

      55 Bender, K.S., "Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough" 73 : 5389-5400, 2007

      56 Masse, E., "A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli" 99 : 4620-4625, 2002

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