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      고수온 스트레스에 반응하는 북방전복 (Haliotis discus hannai) 전사체 차등 발현 비교 분석 = Comparative Transcriptome Analysis of the Response of Pacific abalone (Haliotis discus hannai) after adaptive or acute heat stress condition

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      https://www.riss.kr/link?id=A107771609

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      다국어 초록 (Multilingual Abstract)

      The climate change causes the mass mortality of farmed fish and shellfish. Therefore, it is important to comprehend clearly the physical and molecular mechanisms of abalone under heat stress condition. In order to find genes involved in biological res...

      The climate change causes the mass mortality of farmed fish and shellfish. Therefore, it is important to comprehend clearly the physical and molecular mechanisms of abalone under heat stress condition. In order to find genes involved in biological response to heat stress, we have performed sequencing of transcriptome in two different group of the pacific abalone (Haliotis discus hannai), the breeding line group and the general aquaculture group, after adaptive treatment (18°C → 20°C → 25°C → 30°C) or acute treatment (18°C → 30°C for 0.5hr, 1hr, 3hr or 6hr). Tissue-specific differential expression genes (DEGs) were identified with 52 genes in gonad, 28 in hemocytes, 36 in gills, 31 in muscle and 33 in mantle under different heat shock conditions. There was no significantly differentially expressed pattern of transcriptome in the tested tissues between two groups, except the DEGs from the gonad tissues. Among them, the expression patterns of the XBP1, OS9, VCP, SNRNP70, MGAT2, UBA5, DST, ST13, YOD1 and ERP44 genes in the gonad tissue of the breeding line group showed significant differences from those of all tissues in the general aquaculture group. The present study provides a foundation for understanding the molecular mechanism of heat stress tolerance in abalone. Further functional studies should be performed on the heat stress-related genes identified in this study, which can contribute to the molecular breeding for heat stress tolerance in abalone.

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      참고문헌 (Reference)

      1 박철지, "이배체 및 삼배체 전복(Haliotis discus hannai) 치패에서 주요 열충격 단백질 유전자들(heat shock protein genes)의 발현 특징" 한국수산과학회 53 (53): 515-523, 2020

      2 McCarthy, D. J., "edgeR: A Bioconductor package for differential expression analysis of digital gene expression data" 26 : 139-140, 2009

      3 Bolger, A. M., "Trimmomatic: A flesible trimmer for Illumina sequence data" 30 : 2114-2120, 2014

      4 Nam, B. H., "Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection" 11 : e0153474-, 2016

      5 Cook, P. A., "The worldwide abalone industry" 5 : 1181-1186, 2014

      6 Li, B, "RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome" 12 : 323-, 2011

      7 Kang, H. Y., "Physiological responses of the abalone Haliotis discus hannai to daily and seasonal temperature variations" 9 : 8019-, 2019

      8 Statistics Korea, "Fishery production survey" Korean Statistical Information Service 2020

      9 Kyeong, D., "Expression of heat shock proteins in thermally challenged Pacific abalone Haliotis discus hannai" 11 : 22-, 2020

      10 Estes, J. A., "Evolution of large body size in abalones (Haliotis): patterns and implications" 31 : 591-606, 2005

      1 박철지, "이배체 및 삼배체 전복(Haliotis discus hannai) 치패에서 주요 열충격 단백질 유전자들(heat shock protein genes)의 발현 특징" 한국수산과학회 53 (53): 515-523, 2020

      2 McCarthy, D. J., "edgeR: A Bioconductor package for differential expression analysis of digital gene expression data" 26 : 139-140, 2009

      3 Bolger, A. M., "Trimmomatic: A flesible trimmer for Illumina sequence data" 30 : 2114-2120, 2014

      4 Nam, B. H., "Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection" 11 : e0153474-, 2016

      5 Cook, P. A., "The worldwide abalone industry" 5 : 1181-1186, 2014

      6 Li, B, "RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome" 12 : 323-, 2011

      7 Kang, H. Y., "Physiological responses of the abalone Haliotis discus hannai to daily and seasonal temperature variations" 9 : 8019-, 2019

      8 Statistics Korea, "Fishery production survey" Korean Statistical Information Service 2020

      9 Kyeong, D., "Expression of heat shock proteins in thermally challenged Pacific abalone Haliotis discus hannai" 11 : 22-, 2020

      10 Estes, J. A., "Evolution of large body size in abalones (Haliotis): patterns and implications" 31 : 591-606, 2005

      11 Morash, A.J, "Effects of environmental and farm stress on abalone physiology: perspectives for abalone aquaculture in the face of global climate change" 8 : 342-368, 2016

      12 Ding, J., "Effect of chronic temperature exposure on the immunity of abalone, Haliotis discus hannai" 47 : 2861-2873, 2016

      13 Chen, N., "Different transcriptomic responses to thermal stress in heat-tolerant and heat-sensitive Pacific abalones indicated by cardiac performance" 9 : 1895-, 2019

      14 남보혜, "Analysis of heat, cold or salinity stress-inducible genes in the Pacific abalone, Haliotis discus hannai by suppression subtractive hybridization" 한국패류학회 29 (29): 181-187, 2013

      15 Venter, L., "Abalone growth and associated aspects: now from a metabolic perspective" 10 : 451-473, 2018

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      연월일 이력구분 이력상세 등재구분
      2026 평가예정 재인증평가 신청대상 (재인증)
      2020-01-01 평가 등재학술지 유지 (재인증) KCI등재
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      2013-01-01 평가 등재 1차 FAIL (등재유지) KCI등재
      2010-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2009-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2008-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      2007-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      2006-01-01 평가 등재후보학술지 유지 (등재후보2차) KCI등재후보
      2005-05-30 학술지명변경 한글명 : 한국패류학회지 -> The Korean Journal of Malacology KCI등재후보
      2005-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2004-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.33 0.33 0.34
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.35 0.34 0.331 0.1
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