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      KCI등재 SCOPUS SCIE

      Imprinted gene expression in maize starchy endosperm and aleurone tissues of reciprocal F1 hybrids at a defined developmental stage

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      https://www.riss.kr/link?id=A105059498

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      다국어 초록 (Multilingual Abstract)

      Imprinted gene expression in flowering plants predominantly occurs in the triploid endosperm of developing seed. However, endosperm is composed of distinct tissue types. For example, the maize (Zea mays) endosperm is constituted by two major tissues, ...

      Imprinted gene expression in flowering plants predominantly occurs in the triploid endosperm of developing seed. However, endosperm is composed of distinct tissue types. For example, the maize (Zea mays) endosperm is constituted by two major tissues, starchy endosperm and aleurone. Previous studies in imprinted gene expression have generally assumed that the different tissues constituting endosperm would behavior the same, and hence have not examined them separately. Here, to examine parentalspecific expression of imprinted genes in different parts of the seed, eight previously reported maize protein-coding imprinted genes were selected, and analyzed by cleaved amplified polymorphic sequence (CAPS) coupled with Sanger sequencing for transcripts from the various seed tissues collected at 18 days after pollination (DAP). The studied tissues included seed coat, embryo, starchy endosperm and aleurone, which were collected from a pair of reciprocal F1 hybrids produced by crossing inbred lines B73 and Mo17. Six of these eight analyzed imprinted genes showed the same imprinted expression pattern between the starchy endosperm and aleurone, but two showed imprinted expression only in the starchy endosperm. Comparison of the expression pattern of 20 selected imprinted genes in multiple seed tissues and vegetative tissues indicated that the majority (~ 75%) of these imprinted genes exhibited seedspecific or endosperm-specific expression. Our results also uncovered that imprinted genes have a high propensity to be alternatively spliced via intron retention in the developing embryo compared with the other tissues.

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      참고문헌 (Reference)

      1 Regulski M, "The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA" 23 : 1651-1662, 2013

      2 Lu X, "The differential transcription network between embryo and endosperm in the early developing maize seed" 162 : 440-455, 2013

      3 Sabelli PA, "The development of endosperm in grasses" 149 : 14-26, 2009

      4 Lid SE, "The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily" 99 : 5460-5465, 2002

      5 Hsieh TF, "Regulation of imprinted gene expression in Arabidopsis endosperm" 108 : 1755-1762, 2011

      6 Becraft PW, "Regulation of aleurone development in cereal grains" 62 : 1669-1675, 2011

      7 Waters AJ, "Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm" 23 : 4221-4233, 2011

      8 Leroux BM, "Maize early endosperm growth and development: from fertilization through cell type differentiation" 101 : 1259-1274, 2014

      9 Berger F, "Hypothesis: selection of imprinted genes is driven by silencing deleterious gene activity in somatic tissues" 77 : 23-29, 2012

      10 Wolff P, "Highresolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm" 7 : e1002126-, 2011

      1 Regulski M, "The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA" 23 : 1651-1662, 2013

      2 Lu X, "The differential transcription network between embryo and endosperm in the early developing maize seed" 162 : 440-455, 2013

      3 Sabelli PA, "The development of endosperm in grasses" 149 : 14-26, 2009

      4 Lid SE, "The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily" 99 : 5460-5465, 2002

      5 Hsieh TF, "Regulation of imprinted gene expression in Arabidopsis endosperm" 108 : 1755-1762, 2011

      6 Becraft PW, "Regulation of aleurone development in cereal grains" 62 : 1669-1675, 2011

      7 Waters AJ, "Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm" 23 : 4221-4233, 2011

      8 Leroux BM, "Maize early endosperm growth and development: from fertilization through cell type differentiation" 101 : 1259-1274, 2014

      9 Berger F, "Hypothesis: selection of imprinted genes is driven by silencing deleterious gene activity in somatic tissues" 77 : 23-29, 2012

      10 Wolff P, "Highresolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm" 7 : e1002126-, 2011

      11 Gehring M, "Genomic imprinting: insights from plants" 47 : 187-208, 2013

      12 Xu W, "Genomic imprinting, methylation and parent-of-origin effects in reciprocal hybrid endosperm of castor bean" 42 : 6987-6998, 2014

      13 Florez-Rueda AM, "Genomic imprinting in the endosperm is systematically perturbed in abortive hybrid tomato seeds" 33 : 2935-2946, 2016

      14 Gehring M, "Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds" 6 : e23687-, 2011

      15 Zhang M, "Genome-wide screen of genes imprinted in sorghum endosperm, and the roles of allelic differential cytosine methylation" 85 : 424-436, 2016

      16 Zhang M, "Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize" 24 : 167-176, 2014

      17 Thatcher SR, "Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation" 26 : 3472-3487, 2014

      18 Thatcher SR, "Genome-wide analysis of alternative splicing during development and drought stress in maize" 170 : 586-599, 2016

      19 Zhang M, "Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm" 108 : 20042-20047, 2011

      20 Jiang H, "Evolution, function, and regulation of genomic imprinting in plant seed development" 63 : 4713-4722, 2012

      21 Li J, "Endosperm: food for humankind and fodder for scientific discoveries" 195 : 290-305, 2012

      22 Berger F, "Endosperm: an integrator of seed growth and development" 9 : 664-670, 2006

      23 Lafon-Placette C, "Embryo and endosperm, partners in seed development" 17 : 64-69, 2014

      24 Xin M, "Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development" 25 : 3212-3227, 2013

      25 Waters AJ, "Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species" 110 : 19639-19644, 2013

      26 Yuan J, "Both maternally and paternally imprinted genes regulate seed development in rice" 2017

      27 Estrada AD, "Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR" 3 : e919-, 2015

      28 He S, "A novel imprinted gene nuwa controls mitochondrial function in early seed development in arabidopsis" 13 : e1006553-, 2017

      29 Luo M, "A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm" 7 : e1002125-, 2011

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2012-05-07 학술지명변경 한글명 : 한국유전학회지 -> Genes & Genomics KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-04-14 학술지명변경 외국어명 : Korean Journal of Genetics -> Genes and Genomics KCI등재
      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2002-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      1999-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
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