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      Genome-Wide Identification and Characterization of Novel Laccase Genes in the White-Rot Fungus Flammulina velutipes = Genome-Wide Identification and Characterization of Novel Laccase Genes in the White-Rot Fungus Flammulina velutipes

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      https://www.riss.kr/link?id=A100267357

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      다국어 초록 (Multilingual Abstract)

      The aim of this study was to identify and characterize new Flammulina velutipes laccases from its whole-genome sequence. Of the 15 putative laccase genes detected in the F. velutipes genome, four new laccase genes (fvLac-1, fvLac-2, fvLac3, and fvLac-4) were found to contain four complete copper-binding regions (ten histidine residues and one cysteine residue) and four cysteine residues involved in forming disulfide bridges, fvLac-1, fvLac-2, fvLac3, and fvLac-4, encoding proteins consisting of 516, 518, 515, and 533 amino acid residues, respectively. Potential N-glycosylation sites (Asn-Xaa-Ser/Thr) were identified in the cDNA sequence of fvLac-1 (Asn-454), fvLac-2 (Asn-437 and Asn-455), fvLac-3 (Asn-111 and Asn-237), and fvLac4 (Asn-402 and Asn-457). In addition, the first 19~20 amino acid residues of these proteins were predicted to comprise signal peptides. Laccase activity assays and reverse transcription polymerase chain reaction analyses clearly reveal that CuSO4 affects the induction and the transcription level of these laccase genes.
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      The aim of this study was to identify and characterize new Flammulina velutipes laccases from its whole-genome sequence. Of the 15 putative laccase genes detected in the F. velutipes genome, four new laccase genes (fvLac-1, fvLac-2, fvLac3, and fvLac-...

      The aim of this study was to identify and characterize new Flammulina velutipes laccases from its whole-genome sequence. Of the 15 putative laccase genes detected in the F. velutipes genome, four new laccase genes (fvLac-1, fvLac-2, fvLac3, and fvLac-4) were found to contain four complete copper-binding regions (ten histidine residues and one cysteine residue) and four cysteine residues involved in forming disulfide bridges, fvLac-1, fvLac-2, fvLac3, and fvLac-4, encoding proteins consisting of 516, 518, 515, and 533 amino acid residues, respectively. Potential N-glycosylation sites (Asn-Xaa-Ser/Thr) were identified in the cDNA sequence of fvLac-1 (Asn-454), fvLac-2 (Asn-437 and Asn-455), fvLac-3 (Asn-111 and Asn-237), and fvLac4 (Asn-402 and Asn-457). In addition, the first 19~20 amino acid residues of these proteins were predicted to comprise signal peptides. Laccase activity assays and reverse transcription polymerase chain reaction analyses clearly reveal that CuSO4 affects the induction and the transcription level of these laccase genes.

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      참고문헌 (Reference) 논문관계도

      1 Park YJ, "Whole genome and global gene expression analyses of the model mushroom Flammulina velutipes reveal a high capacity for lignocellulose degradation" PLos One 9 : e93560 ~, 2014

      2 Thurston CF, "The structure and function of fungal laccases" Microbiology 140 : 19 ~ 26, 1994

      3 Pezzella C, "The Pleurotus ostreatus laccase multi-gene family: isolation and heterologous expression of new family members" Curr Genet 55 : 45 ~ 57, 2009

      4 von Heijine G, "Signal sequences: the limits of variation" J Mol Biol 184 : 99 ~ 105, 1985

      5 Collins PJ, "Regulation of laccase gene transcription in Trametes versicolor" Appl Environ Microbiol 63 : 3444 ~ 3450, 1997

      6 Bento I, "Reduction of dioxygen by enzymes containing copper" J Biol Inorg Chem 11 : 539 ~ 547, 2006

      7 Baneyx E, "Recombinant protein expression in Escherichia coli" Curr Opin Biotechnol 10 : 411 ~ 421, 1999

      8 Dittmer JK, "Production of multiple laccase isoforms by Phanerochaete chrysosporium grown under nutrient sufficiency" FE Microbiol Lett 149 : 65 ~ 70, 1997

      9 Mayer AM, "Polyphenol oxidases in plants: recent progress" Phytochemistry 26 : 11 ~ 20, 1986

      10 Psurtseva NV, "Modern taxonomy and medicinal value of the Flammulina mushrooms" Int J Med Mushroo 7 : 449 ~ 451, 2006

      1 Park YJ, "Whole genome and global gene expression analyses of the model mushroom Flammulina velutipes reveal a high capacity for lignocellulose degradation" PLos One 9 : e93560 ~, 2014

      2 Thurston CF, "The structure and function of fungal laccases" Microbiology 140 : 19 ~ 26, 1994

      3 Pezzella C, "The Pleurotus ostreatus laccase multi-gene family: isolation and heterologous expression of new family members" Curr Genet 55 : 45 ~ 57, 2009

      4 von Heijine G, "Signal sequences: the limits of variation" J Mol Biol 184 : 99 ~ 105, 1985

      5 Collins PJ, "Regulation of laccase gene transcription in Trametes versicolor" Appl Environ Microbiol 63 : 3444 ~ 3450, 1997

      6 Bento I, "Reduction of dioxygen by enzymes containing copper" J Biol Inorg Chem 11 : 539 ~ 547, 2006

      7 Baneyx E, "Recombinant protein expression in Escherichia coli" Curr Opin Biotechnol 10 : 411 ~ 421, 1999

      8 Dittmer JK, "Production of multiple laccase isoforms by Phanerochaete chrysosporium grown under nutrient sufficiency" FE Microbiol Lett 149 : 65 ~ 70, 1997

      9 Mayer AM, "Polyphenol oxidases in plants: recent progress" Phytochemistry 26 : 11 ~ 20, 1986

      10 Psurtseva NV, "Modern taxonomy and medicinal value of the Flammulina mushrooms" Int J Med Mushroo 7 : 449 ~ 451, 2006

      11 Matheny PB, "Major clades of Agaricales: a multilocus phylogenetic overview" Mycologia 98 : 982 ~ 995, 2006

      12 Hatakka A, "Lignin-modifying enzymes from selected whiterot fungi: production and role in lignin degradation" FE Microbiol Rev 13 : 125 ~ 135, 1994

      13 Gianfreda L, "Laccases: a useful group of oxidoreductive enzymes" Bioremed J 3 : 1 ~ 26, 1999

      14 Tlecuitl-Beristain S, "Laccases of Pleurotus ostreatus observed at different phases of its growth in submerged fermentation:production of a novel laccase isoform" Mycol Res 112 : 1080 ~ 1084, 2008

      15 Mayer AM, "Laccase: new functions for an old enzyme" Phytochemistry 60 : 551 ~ 565, 2002

      16 Fernández-Larrea J, "Isolation and characterization of a laccase gene from Podospora anserina" Mol Gen Genet 252 : 539 ~ 551, 1996

      17 Piscitelli A, "Heterologous laccase production and its role in industrial applications" Bioeng Bugs 1 : 252 ~ 262, 2010

      18 Baldrian P, "Fungal laccases: occurrence and properties" FE Microbiol Rev 30 : 215 ~ 242, 2006

      19 Soden DM, "Differential regulation of laccase gene expression in Pleurotus sajor-caju" Microbiology 147 (Pt 7) : 1755 ~ 1763, 2001

      20 Vyas BR, "Degradation of anthracene by selected white rot fungi" FE Microbiol Ecol 14 : 65 ~ 70, 1994

      21 Asgher M, "Decolorization of some reactive textile dyes by white rot fungi isolated in Pakistan" World J Microbiol Biotechnol 22 : 89 ~ 93, 2006

      22 Bertrand T, "Crystal structure of a four-copper laccase complexed with an arylamine: insights into substrate recognition and correlation with kinetics" Biochemistry 41 : 7325 ~ 7333, 2002

      23 Palmieri G, "Copper induction of laccase isoenzymes in the ligninolytic fungus Pleurotus ostreatus" Appl Environ Microbiol 66 : 920 ~ 924, 2000

      24 Galhaup C, "Characterization of the major laccase isoenzyme from Trametes pubescens and regulation of its synthesis by metal ions" Microbiology 148 (Pt 7) : 2159 ~ 2169, 2002

      25 Faraco V, "Bio-remediation of colored industrial wastewaters by the white-rot fungi Phanerochaete chrysosporium and Pleurotus ostreatus and their enzymes" Biodegradation 20 : 209 ~ 220, 2009

      26 Stanke M, "AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints" Nucleic Acids Res 33 : W465 ~ W467, 2005

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