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      KCI등재 SCIE SCOPUS

      Engineering Escherichia coli to Sense Non-native Environmental Stimuli: Synthetic Chimera Two-component Systems

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      https://www.riss.kr/link?id=A106225576

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      다국어 초록 (Multilingual Abstract)

      The Two-component Regulatory System (TCS) is the primary mode that bacteria use to continuously sense the environment. A TCS is comprised of a periplasmic sensor Histidine kinase (HK) domain and a cytoplasmic Response regulator (RR) domain. The HK domain phosphorylates the RR domain to activate the effector gene expression. Utilizing a rational approach, the sensor HK was genetically engineered in Escherichia coli to create chimeric HK, by a rewiring or domain swapping strategy.
      Apart from the wild-type characteristics, chimeric HK imparts novel or the desired characteristics and ability to genetically engineered E. coli for its adaptation and survival.
      This review focuses on the design, potential applications, and future perspectives of chimeric HKs used as high throughput screening biosensors of various compounds.
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      The Two-component Regulatory System (TCS) is the primary mode that bacteria use to continuously sense the environment. A TCS is comprised of a periplasmic sensor Histidine kinase (HK) domain and a cytoplasmic Response regulator (RR) domain. The HK dom...

      The Two-component Regulatory System (TCS) is the primary mode that bacteria use to continuously sense the environment. A TCS is comprised of a periplasmic sensor Histidine kinase (HK) domain and a cytoplasmic Response regulator (RR) domain. The HK domain phosphorylates the RR domain to activate the effector gene expression. Utilizing a rational approach, the sensor HK was genetically engineered in Escherichia coli to create chimeric HK, by a rewiring or domain swapping strategy.
      Apart from the wild-type characteristics, chimeric HK imparts novel or the desired characteristics and ability to genetically engineered E. coli for its adaptation and survival.
      This review focuses on the design, potential applications, and future perspectives of chimeric HKs used as high throughput screening biosensors of various compounds.

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      참고문헌 (Reference)

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      2 Harms, N, "Two-component system that regulates methanol and formaldehyde oxidation in Paracoccus denitrificans" 183 : 664-670, 2001

      3 Baumgartner, J. W, "Transmembrane signalling by a hybrid protein : communication from the domain of chemoreceptor Trg that recognizes sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ" 176 : 1157-1163, 1994

      4 Anantharaman, V, "The signaling helix : a common functional theme in diverse signaling proteins" 1 : 25-, 2006

      5 Casino, P, "The mechanism of signal transduction by two-component systems" 20 : 763-771, 2010

      6 Blain, K. Y, "The functionally active Mistic-fused histidine kinase receptor, EnvZ" 49 : 9089-9095, 2010

      7 Sonawane, A. M, "The AauRAauS two-component system regulates uptake and metabolism of acidic amino acids in Pseudomonas putida" 72 : 6569-6577, 2006

      8 Radaev, S, "Ternary complex of transforming growth factor-β1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily" 285 : 14806-14814, 2010

      9 Levskaya, A, "Synthetic biology: engineering Escherichia coli to see light" 438 : 441-442, 2005

      10 Andrianantoandro, E, "Synthetic biology : new engineering rules for an emerging discipline" 2 : 1-14, 2006

      1 Stock, A. M, "Twocomponent signal transduction" 69 : 183-215, 2000

      2 Harms, N, "Two-component system that regulates methanol and formaldehyde oxidation in Paracoccus denitrificans" 183 : 664-670, 2001

      3 Baumgartner, J. W, "Transmembrane signalling by a hybrid protein : communication from the domain of chemoreceptor Trg that recognizes sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ" 176 : 1157-1163, 1994

      4 Anantharaman, V, "The signaling helix : a common functional theme in diverse signaling proteins" 1 : 25-, 2006

      5 Casino, P, "The mechanism of signal transduction by two-component systems" 20 : 763-771, 2010

      6 Blain, K. Y, "The functionally active Mistic-fused histidine kinase receptor, EnvZ" 49 : 9089-9095, 2010

      7 Sonawane, A. M, "The AauRAauS two-component system regulates uptake and metabolism of acidic amino acids in Pseudomonas putida" 72 : 6569-6577, 2006

      8 Radaev, S, "Ternary complex of transforming growth factor-β1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily" 285 : 14806-14814, 2010

      9 Levskaya, A, "Synthetic biology: engineering Escherichia coli to see light" 438 : 441-442, 2005

      10 Andrianantoandro, E, "Synthetic biology : new engineering rules for an emerging discipline" 2 : 1-14, 2006

      11 Moglich, A, "Structure and signaling mechanism of Per-ARNT-Sim domains" 17 : 1282-1294, 2009

      12 Laub, M. T, "Specificity in Two-Component Signal Transduction Pathways" 41 : 121-145, 2007

      13 Forst, S. A, "Signal transduction by the EnvZ-OmpR phosphotransfer system in bacteria" 145 : 363-373, 1994

      14 Wang, B, "Rewiring cell signalling through chimaeric regulatory protein engineering" 41 : 1195-1200, 2013

      15 Sugie, Y, "Reconstruction of a chromatic response system in Escherichia coli" 62 : 140-143, 2016

      16 Anh Duc Nguyen, "Reconstruction of Methanol and Formate Metabolic Pathway in Non-native Host for Biosynthesis of Chemicals and Biofuels" 한국생물공학회 21 (21): 477-482, 2016

      17 Xin, J. Y, "Production of methanol from methane by methanotrophic bacteria" 22 : 225-229, 2004

      18 Aiba, H, "Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, stimulates the transcription of the ompF and ompC genes in Escherichia coli" 261 : 19-22, 1990

      19 Aiba, H, "Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, results in stimulation of its DNA-binding ability" 106 : 5-7, 1989

      20 Forst, S, "Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli" 86 : 6052-6056, 1989

      21 Xu, H. H, "Nucleotide sequence of the mxcQ and mxcE genes, required for methanol dehydrogenase synthesis in Methylobacterium organophilum XX : a two-component regulatory system" 141 : 2543-2551, 1995

      22 Schink, B, "Microbial methanol formation : A major end product of pectin metabolism" 4 : 387-389, 1980

      23 이혜미, "Microbial Production of Ethanol from Acetate by Engineered Ralstonia eutropha" 한국생물공학회 21 (21): 402-407, 2016

      24 Chistoserdova, L, "Methylotrophy in Methylobacterium extorquens AM1from a genomic point of view" 185 : 2980-2987, 2003

      25 Forst, S, "Localization and membrane topology of EnvZ, a protein involved in osmoregulation of OmpF and OmpC in Escherichia coli" 262 : 16433-16438, 1987

      26 Yang, Y, "Ligand binding induces an asymmetrical transmembrane signal through a receptor dimer" 232 : 493-498, 1993

      27 Zhang, X, "L-malate production by metabolically engineered Escherichia coli" 77 : 427-434, 2011

      28 Utsumi, R, "Inouye(1989)Activation of bacterial porin gene expression by a chimeric signal transducer in response to aspartate" 245 : 1246-1249, 1989

      29 Golby, P, "Identification and characterization of a two-component sensor-kinase and response-regulator system(DcuS-DcuR)controlling gene expression in response to C4-dicarboxylates in Escherichia coli" 181 : 1238-1248, 1999

      30 박유진, "High-Throughput Engineering of Initial Coding Regions for Maximized Production of Recombinant Proteins" 한국생물공학회 22 (22): 497-503, 2017

      31 Rosenberg, M, "Formation of L-malic acid by yeasts of the genus Dipodascus" 29 : 221-223, 1999

      32 Brusstar MJ, H. D, "Environmental and human health considerations for methanol as a transportation fuel" 2008

      33 Igo, M. M, "EnvZ, a transmembrane environmental sensor of Escherichia coli K-12, is phosphorylated in vitro" 170 : 5971-5973, 1988

      34 SAMBANDAM RAVIKUMAR, "Engineering Escherichia coli to sense acidic amino acids by introduction of a chimeric two-component system" 한국화학공학회 32 (32): 2073-2077, 2015

      35 서주현, "Engineering Escherichia coli BL21 Genome to Improve the Heptanoic Acid Tolerance by using CRISPR-Cas9 System" 한국생물공학회 22 (22): 231-238, 2017

      36 Vidhya Selvamani, "Engineering Chimeric Two-component System into Escherichia coli from Paracoccus denitrificans to Sense Methanol" 한국생물공학회 22 (22): 225-230, 2017

      37 Ganesh, I, "Engineered fumarate sensing Escherichia coli based on novel chimeric two-component system" 168 : 560-566, 2013

      38 Rabin, R. S, "Dual response regulators(NarL and NarP)interact with dual sensors(NarX and NarQ)to control nitrate-and nitrite-regulated gene expression in Escherichia coli K-12" 175 : 3259-3268, 1993

      39 Kupferschmied, P, "Domain shuffling in a sensor protein contributed to the evolution of insect pathogenicity in plantbeneficial Pseudomonas protegens" 10 : e1003964-, 2014

      40 Pryciak, P. M, "Designing new cellular signaling pathways" 16 : 249-254, 2009

      41 Moglich, A, "Design and signaling mechanism of light-regulated histidine kinases" 385 : 1433-1444, 2009

      42 Bressler, E, "Conversion of fumaric acid to L-malic by sol-gel immobilized Saccharomyces cerevisiae in a supported liquid membrane bioreactor" 18 : 445-450, 2002

      43 Vidhya Selvamani, "Construction of methanol sensing Escherichia coli by the introduction of novel chimeric MxcQZ/OmpR two-component system from Methylobacterium organophilum XX" 한국화학공학회 34 (34): 1734-1739, 2017

      44 Ganesh, I, "Construction of malate-sensing Escherichia coli by introduction of a novel chimeric two-component system" 38 : 797-804, 2015

      45 Hori, M, "Construction of a photo-responsive chimeric histidine kinase in Escherichia coli" 63 : 44-50, 2017

      46 Irisappan Ganesh, "Construction of Methanol-Sensing Escherichia coli by the Introduction of a Paracoccus denitrificans MxaY-Based Chimeric Two-Component System" 한국미생물·생명공학회 27 (27): 1106-1111, 2017

      47 Roosild, T. P, "Characterization of the family of Mistic homologues" 6 : 10-, 2006

      48 Unden, G, "C4-dicarboxylate degradation in aerobic and anaerobic growth. p.pp. chapter 3.4.5" ASM Press 2004

      49 채철기, "Biosynthesis of Poly(2-hydroxybutyrate-co-lactate) in Metabolically Engineered Escherichia coli" 한국생물공학회 21 (21): 169-174, 2016

      50 Kefala, G, "Application of Mistic to improving the expression and membrane integration of histidine kinase receptors from Escherichia coli" 8 : 167-172, 2007

      51 Zhu, Y, "Analysis of the role of the EnvZ linker region in signal transduction using a chimeric Tar/EnvZ receptor protein, Tez1" 278 : 22812-22819, 2003

      52 Alteri, C. J, "Anaerobic respiration using a complete oxidative TCA cycle drives multicellular swarming in proteus mirabilis" 3 : 2012

      53 Lehning, C. E, "A modular high-throughput in vivo screening platform based on chimeric bacterial receptors" 6 : 1315-1326, 2017

      54 Yeh, K. C, "A cyanobacterial phytochrome two-component light sensory system" 277 : 1505-1508, 1997

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2001-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.14 0.13 0.75
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.57 0.46 0.239 0.02
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