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      KCI등재 SCIE

      A review on Silver-mediated DNA base pairs: methodology and application

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      https://www.riss.kr/link?id=A108504694

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      다국어 초록 (Multilingual Abstract)

      The investigation of the interaction between metal ions and DNA has always attracted much attention in the fields of bioinorganic chemistry, supramolecular coordination hemistry, and DNA nanotechnology. Its mode of action can be simply divided into tw...

      The investigation of the interaction between metal ions and DNA has always attracted much attention in the fields of bioinorganic chemistry, supramolecular coordination hemistry, and DNA nanotechnology. Its mode of action can be simply divided into two aspects. On the one hand, it is non-specific electrostatic adsorption, mainly including Na+, K+, Mg2+, Ca2+ and other physiologically regulating ions; on the other hand, it is specific covalent binding, such as Pt2+, Hg2+, Ag+ and other heavy metal ions. This article focuses on the mechanism of action between Ag+ and DNA mismatch pair C-C, and summarizes its main characterization methods and various applications. It aims to provide a certain reference for the field of biological devices. With the development of cryoelectron microscopy and liquidcell TEM, the structure of C-Ag+-C is expected to be further characterized, which will be more widely used.

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      참고문헌 (Reference) 논문관계도

      1 Takenori Dairaku, "Structure Determination of an AgI-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with1H/15N/109 Ag NMR Spectroscopy" Wiley 22 (22): 13028-13031, 2016

      2 Ono A, "Specific interactions between silver(i) ions and cytosine-cytosine pairs in DNA duplexes" 10 : 4825-4827, 2008

      3 Kimberly S. Butler, "Silver nanoparticles: correlating nanoparticle size and cellular uptake with genotoxicity" Oxford University Press (OUP) 30 (30): 577-591, 2015

      4 Li Xu, "Silver nanoparticles: Synthesis, medical applications and biosafety" Ivyspring International Publisher 10 (10): 8996-9031, 2020

      5 Chiqian Zhang, "Silver nanoparticles in aquatic environments: Physiochemical behavior and antimicrobial mechanisms" Elsevier BV 88 : 403-427, 2016

      6 S.P. Deshmukh, "Silver nanoparticles as an effective disinfectant: A review" Elsevier BV 97 : 954-965, 2019

      7 Man C. Fung, "Silver Products for Medical Indications: Risk-Benefit Assessment" Informa UK Limited 34 (34): 119-126, 1996

      8 BARNETT ROSENBERG, "Platinum Compounds: a New Class of Potent Antitumour Agents" Springer Science and Business Media LLC 222 (222): 385-386, 1969

      9 Jens Müller, "Nucleic acid duplexes with metal-mediated base pairs and their structures" Elsevier BV 393 : 37-47, 2019

      10 Philipp Scharf, "Nucleic Acids With Metal-Mediated Base Pairs and Their Applications" Wiley 78 (78): 20-34, 2012

      1 Takenori Dairaku, "Structure Determination of an AgI-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with1H/15N/109 Ag NMR Spectroscopy" Wiley 22 (22): 13028-13031, 2016

      2 Ono A, "Specific interactions between silver(i) ions and cytosine-cytosine pairs in DNA duplexes" 10 : 4825-4827, 2008

      3 Kimberly S. Butler, "Silver nanoparticles: correlating nanoparticle size and cellular uptake with genotoxicity" Oxford University Press (OUP) 30 (30): 577-591, 2015

      4 Li Xu, "Silver nanoparticles: Synthesis, medical applications and biosafety" Ivyspring International Publisher 10 (10): 8996-9031, 2020

      5 Chiqian Zhang, "Silver nanoparticles in aquatic environments: Physiochemical behavior and antimicrobial mechanisms" Elsevier BV 88 : 403-427, 2016

      6 S.P. Deshmukh, "Silver nanoparticles as an effective disinfectant: A review" Elsevier BV 97 : 954-965, 2019

      7 Man C. Fung, "Silver Products for Medical Indications: Risk-Benefit Assessment" Informa UK Limited 34 (34): 119-126, 1996

      8 BARNETT ROSENBERG, "Platinum Compounds: a New Class of Potent Antitumour Agents" Springer Science and Business Media LLC 222 (222): 385-386, 1969

      9 Jens Müller, "Nucleic acid duplexes with metal-mediated base pairs and their structures" Elsevier BV 393 : 37-47, 2019

      10 Philipp Scharf, "Nucleic Acids With Metal-Mediated Base Pairs and Their Applications" Wiley 78 (78): 20-34, 2012

      11 Song Xu, "Methylene blue-based distinguishing DNA conformation for colorimetric detection of silver ions" Elsevier BV 147 : 995-998, 2019

      12 Jens Müller, "Metal‐Ion‐Mediated Base Pairs in Nucleic Acids" Wiley 2008 (2008): 3749-3763, 2008

      13 Biswarup Jash, "Metal-Mediated Base Pairs: From Characterization to Application" Wiley 23 (23): 17166-17178, 2017

      14 Ki Soo Park, "Metal ion triggers for reversible switching of DNA polymerase" Royal Society of Chemistry (RSC) 52 (52): 4868-4871, 2016

      15 Yoko Miyake, "MercuryII-Mediated Formation of Thymine−HgII−Thymine Base Pairs in DNA Duplexes" American Chemical Society (ACS) 128 (128): 2172-2173, 2006

      16 Dakal TC, "Mechanistic basis of antimicrobial actions of silver nanoparticles" 7 : 1831-1848, 2016

      17 Mahmoud Hoseinnejad, "Inorganic and metal nanoparticles and their antimicrobial activity in food packaging applications" Informa UK Limited 44 (44): 161-181, 2017

      18 J. Wesley Alexander, "History of the Medical Use of Silver" Mary Ann Liebert Inc 10 (10): 289-292, 2009

      19 Jiro Kondo, "High‐Resolution Crystal Structure of a Silver(I)–RNA Hybrid Duplex Containing Watson–Crick‐like CSilver(I)C Metallo‐Base Pairs" Wiley 54 (54): 13323-13326, 2015

      20 Jinsung Park, "High-sensitivity detection of silver ions using oligonucleotide-immobilized oscillator" Elsevier BV 41 : 471-476, 2013

      21 Peng Miao, "Gold Nanoparticles and Cleavage-Based Dual Signal Amplification for Ultrasensitive Detection of Silver Ions" American Chemical Society (ACS) 85 (85): 7966-7970, 2013

      22 Katharina M. Fromm, "Give silver a shine" Springer Science and Business Media LLC 3 (3): 178-178, 2011

      23 Yongjie Xu, "Fluorometric detection of silver(I) using cytosine-Ag(I)-cytosine pair formation, DNA assembly and the AND logic operation of a multiple-component DNAzyme" Springer Science and Business Media LLC 186 (186): 2019

      24 Gongke Wang, "Fluorescence polarization sensor platform based on gold nanoparticles for the efficient detection of Ag (І)" Elsevier BV 210 : 21-27, 2019

      25 Dongtak Lee, "Extremely sensitive and wide-range silver ion detection via assessing the integrated surface potential of a DNA-capped gold nanoparticle" IOP Publishing 30 (30): 085501-, 2018

      26 Natalie Fardian-Melamed, "Electronic Level Structure of Silver-Intercalated Cytosine Nanowires" American Chemical Society (ACS) 20 (20): 4505-4511, 2020

      27 Marie-Anne Tartanson, "Dynamic Mechanisms of the Bactericidal Action of an Al2O3-TiO2-Ag Granular Material on an Escherichia coli Strain" American Society for Microbiology 81 (81): 7135-7142, 2015

      28 Xiwen Xing, "Direct Observation of the Double-Stranded DNA Formation through Metal Ion-Mediated Base Pairing in the Nanoscale Structure" Wiley 25 (25): 1446-1450, 2018

      29 Chanho Park, "Detection and discrimination of single nucleotide polymorphisms by exploiting metal ion-mediated DNA duplex" Elsevier BV 305 : 127493-, 2020

      30 Wan Yi Xie, "Design of a dual-output fluorescent DNA logic gate and detection of silver ions and cysteine based on graphene oxide" Royal Society of Chemistry (RSC) 48 (48): 82-84, 2012

      31 Nadrian C. Seeman, "DNA nanotechnology" Springer Science and Business Media LLC 3 (3): 2017

      32 Bingling Li, "DNA based gold nanoparticles colorimetric sensors for sensitive and selective detection of Ag(I) ions" Elsevier BV 644 (644): 78-82, 2009

      33 Wei Deng, "DNA Logic Gate Based on Metallo-Toehold Strand Displacement" Public Library of Science (PLoS) 9 (9): e111650-, 2014

      34 Syed Anees Ahmad, "Bactericidal activity of silver nanoparticles: A mechanistic review" Elsevier BV 3 : 756-769, 2020

      35 Chandradhish Ghosh, "Alternatives to Conventional Antibiotics in the Era of Antimicrobial Resistance" Elsevier BV 27 (27): 323-338, 2019

      36 Alessandro Porchetta, "Allosterically Tunable, DNA-Based Switches Triggered by Heavy Metals" American Chemical Society (ACS) 135 (135): 13238-13241, 2013

      37 Genping Yan, "A highly sensitive electrochemical assay for silver ion detection based on un-labeled C-rich ssDNA probe and controlled assembly of MWCNTs" Elsevier BV 94 : 178-183, 2012

      38 Yanqin Wen, "A graphene-based fluorescent nanoprobe for silver(i) ions detection by using graphene oxide and a silver-specific oligonucleotide" Royal Society of Chemistry (RSC) 46 (46): 2596-, 2010

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