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      UNG 기반 direct polymerase chain reaction (udPCR)을 이용한 돼지 써코바이러스 2형 진단법 = UNG-based direct polymerase chain reaction (udPCR) for the detection of porcine circovirus 2 (PCV2)

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      https://www.riss.kr/link?id=A100269051

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      다국어 초록 (Multilingual Abstract)

      Porcine circovirus disease (PCVD) is a major problem of swine industry worldwide, and diagnosis of PCV2, causal agent of PCVD, has been doing in clinical laboratories of pig disease by polymerase chain reaction (PCR) methods. But the PCR analyses have...

      Porcine circovirus disease (PCVD) is a major problem of swine industry worldwide, and diagnosis of PCV2, causal agent of PCVD, has been doing in clinical laboratories of pig disease by polymerase chain reaction (PCR) methods. But the PCR analyses have a serious problem of misdiagnosis by contamination of DNA, in particular, from carryover contamination with previously amplified DNA or extracted DNA from field samples. In this study, an uracil DNA glycosylase (UNG)-based direct PCR (udPCR) without DNA extraction process and DNA carryover contamination was developed and evaluated on PCV2 culture and field pig samples. The sensitivity of the udPCR combined with dPCR and uPCR was same or better than that of the commercial PCR (cPCR) kit (Median diagnostics, Korea) on PCV2-positive serum, lymph node and lung samples of the pigs. In addition, the udPCR method confirmed to have a preventing ability of mis-amplification by contamination of pre-amplified PCV2 DNA from previous udPCR. In clinical application, 170 pig samples (86 tissues and 84 serum) were analysed by cPCR kit and resulted in 37% (63/170) of positive reaction, while the udPCR was able to detect the PCV2 DNA in 45.3% (77/170) with higher sensitivity than cPCR. In conclusion, the udPCR developed in the study is a time, labor and cost saving method for the detection of PCV2 and providing a preventing effect for DNA carryover contamination that can occurred in PCR process. Therefore, the udPCR assay could be an useful alternative method for the diagnosis of PCV2 in the swine disease diagnostic laboratories.

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      참고문헌 (Reference)

      1 박최규, "이유자돈 전신소모성증후군 이환 자돈에서의 바이러스성 원인체 검색 및 porcine circovirus2분리동정" 대한수의학회 44 (44): 561-569, 2004

      2 Longo MC, "Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions" 93 : 125-128, 1990

      3 Pang J, "Use of modified nucleotides and uracil-DNA glycosylase(UNG)for the control of contamination in the PCR-based amplification of RNA" 6 : 251-256, 1992

      4 Taggart EW, "Use of heat labile UNG in an RT-PCR assay for enterovirus detection" 105 : 57-65, 2002

      5 Larochelle R, "Typing of porcine circovirus in clinical specimens by multiplex PCR" 80 : 69-75, 1999

      6 Cheng ZJ, "Rapid quantification of hepatitis B virus DNA by direct real-time PCR from serum without DNA extraction" 56 : 766-771, 2007

      7 Brunborg IM, "Quantitation of porcine circovirus type 2 isolated from serum/plasma and tissue samples of healthy pigs and pigs with postweaning multisystemic wasting syndrome using a TaqManbased real-time PCR" 122 : 171-178, 2004

      8 Segalés J, "Quantification of porcine circovirus type 2(PCV2)DNA in serum and tonsillar, nasal, tracheo-bronchial, urinary and faecal swabs of pigs with and without postweaning multisystemic wasting syndrome(PMWS)" 111 : 223-229, 2005

      9 김혜권, "Quantification and genotyping of PCV2 DNA in the tissues of PCV2-infected conventional pigs with different clinical signs" 대한수의학회 51 (51): 7-14, 2011

      10 Tetzner R, "Prevention of PCR cross-contamination by UNG treatment of bisulfite-treated DNA" 507 : 357-370, 2009

      1 박최규, "이유자돈 전신소모성증후군 이환 자돈에서의 바이러스성 원인체 검색 및 porcine circovirus2분리동정" 대한수의학회 44 (44): 561-569, 2004

      2 Longo MC, "Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions" 93 : 125-128, 1990

      3 Pang J, "Use of modified nucleotides and uracil-DNA glycosylase(UNG)for the control of contamination in the PCR-based amplification of RNA" 6 : 251-256, 1992

      4 Taggart EW, "Use of heat labile UNG in an RT-PCR assay for enterovirus detection" 105 : 57-65, 2002

      5 Larochelle R, "Typing of porcine circovirus in clinical specimens by multiplex PCR" 80 : 69-75, 1999

      6 Cheng ZJ, "Rapid quantification of hepatitis B virus DNA by direct real-time PCR from serum without DNA extraction" 56 : 766-771, 2007

      7 Brunborg IM, "Quantitation of porcine circovirus type 2 isolated from serum/plasma and tissue samples of healthy pigs and pigs with postweaning multisystemic wasting syndrome using a TaqManbased real-time PCR" 122 : 171-178, 2004

      8 Segalés J, "Quantification of porcine circovirus type 2(PCV2)DNA in serum and tonsillar, nasal, tracheo-bronchial, urinary and faecal swabs of pigs with and without postweaning multisystemic wasting syndrome(PMWS)" 111 : 223-229, 2005

      9 김혜권, "Quantification and genotyping of PCV2 DNA in the tissues of PCV2-infected conventional pigs with different clinical signs" 대한수의학회 51 (51): 7-14, 2011

      10 Tetzner R, "Prevention of PCR cross-contamination by UNG treatment of bisulfite-treated DNA" 507 : 357-370, 2009

      11 Rys PN, "Preventing false positives : quantitative evaluation of three protocols for inactivation of polymerase chain reaction amplification products" 31 : 2356-2360, 1993

      12 Aslanzadeh J, "Preventing PCR amplification carryover contamination in a clinical laboratory" 34 : 389-396, 2004

      13 Opriessnig T, "Porcine circovirus type 2 associated disease : update on current terminology, clinical manifestations, pathogenesis, diagnosis, and intervention strategies" 19 : 591-615, 2007

      14 Chae C, "Porcine circovirus type 2 and its associated diseases in Korea" 164 : 107-113, 2012

      15 Persing DH, "Polymerase chain reaction : trenches to benches" 29 : 1281-1285, 1990

      16 Poddar SK, "Optimized PCR amplification of influenza A virus RNA using Tth DNA polymerase, incorporating uracil N glycosylase(UNG)in a single tube reaction" 11 : 323-327, 1997

      17 Kermekchiev MB, "Mutants of Taq DNA polymerase resistant to PCR inhibitors allow DNA amplification from whole blood and crude soil samples" 37 : e40-, 2009

      18 Ouardani M, "Multiplex PCR for detection and typing of porcine circoviruses" 37 : 3917-3924, 1999

      19 Trible BR, "Genetic variation of porcine circovirus type 2(PCV2)and its relevance to vaccination, pathogenesis and diagnosis" 164 : 68-77, 2012

      20 Borst A, "False-positive results and contamination in nucleic acid amplification assays : suggestions for a prevent and destroy strategy" 23 : 289-299, 2004

      21 Li Y, "Evaluation of four template preparation methods for polymerase chain reaction-based detection of Salmonella in ground beef and chicken" 35 : 508-512, 2002

      22 Lyoo KS, "Evaluation of a nested polymerase chain reaction assay to differentiate between two genotypes of porcine circovirus 2" 20 : 283-288, 2008

      23 Segalés J, "Diseases of Swine" Wiley-Blackwell Publishing 405-417, 2012

      24 송만기, "Direct Multiplex Reverse Transcription-Nested PCR Detection of Influenza Viruses Without RNA Purification" 한국미생물·생명공학회 19 (19): 1470-1474, 2009

      25 Yang BC, "Comparative evaluation of conventional polymerase chain reaction (PCR), with loop-mediated isothermal amplification and SYBR green I-based real-time PCR for the quantitation of porcine circovirus-1 DNA in contaminated samples destined for vaccine production" 191 : 1-8, 2013

      26 Kwok S, "Avoiding false positives with PCR" 339 : 237-238, 1989

      27 Champlot S, "An Efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications" 5 : e13042-, 2010

      28 Bellstedt DU, "A rapid and inexpensive method for the direct PCR amplification of DNA from plants" 97 : e65-e68, 2010

      29 Yang YG, "A novel buffer system, AnyDirect, can improve polymerase chain reaction from whole blood without DNA isolation" 380 : 112-117, 2007

      30 Biswas C, "A method of direct PCR without DNA extraction for rapid detection of begomoviruses infecting jute and mesta" 58 : 350-355, 2014

      31 Li H, "A PCR amplification method without DNA extraction" 32 : 394-397, 2011

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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.2 0.2 0.22
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.23 0.24 0.315 0
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