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      KCI등재 SCIE SCOPUS

      Brevibacillus antibioticus sp. nov., with a broad range of antibacterial activity, isolated from soil in the Nakdong River

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      https://www.riss.kr/link?id=A106410460

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      다국어 초록 (Multilingual Abstract)

      A Gram-stain-positive, aerobic, motile, and rod-shaped bacterial strain designated TGS2-1T was isolated from sediment soil in the Nakdong River, Republic of Korea. The optimal growth of strain TGS2-1T was observed at 28°C and pH 7.0 without NaCl supp...

      A Gram-stain-positive, aerobic, motile, and rod-shaped bacterial strain designated TGS2-1T was isolated from sediment soil in the Nakdong River, Republic of Korea. The optimal growth of strain TGS2-1T was observed at 28°C and pH 7.0 without NaCl supplementation. Strain TGS2-1T revealed antibiosis against various bacteria, including Staphylococcus aureus KCCM 4051, CCARM 3089 (methicillin resistant strains), Enterococcus faecalis KCCM 11814, Escherichia coli KCTC 2443, Candida albicans KACC 7270, and Filobasidium neoformans KCTC 7902. Phylogenetic analyses based on the 16S rRNA gene sequences indicated that strain TGS2-1T belonged to the genus Brevibacillus and shared 93.8–99.7% sequence similarity with Brevibacillus species. Whole-genome sequencing of strain TGS2-1T revealed a genome size of 6.2 Mbp and DNA G + C content of 47.0 mol%. The TGS2-1T genome shared an average nucleotide identity and digital DNA-DNA hybridization of 74.6–93.3% and 18.6–67.1%, respectively, with six related Brevibacillus genomes. The major fatty acid constituents of strain TGS2-1T were anteiso-C15:0 (62.3%) and anteiso-C17:0 (10.8%). Cells of strain TGS2-1T contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, seven unidentified aminophospholipids, and five unidentified lipids. The isoprenoid quinone detected in the strain was menaquinone-7 (MK-7). Based on data obtained from this polyphasic taxonomic study, strain TGS2-1T represents a novel species belonging to genus Brevibacillus, for which the name B. antibioticus sp. nov. is proposed.
      The type strain is TGS2-1T (= KCCM 90326T = NBRC 113840T = FBCC-B2501).

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      참고문헌 (Reference)

      1 Medema, M. H., "antiSMASH : Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences" 39 : W339-W346, 2011

      2 Fitch, W. M, "Toward defining the course of evolution : minimum change for a specific tree topology" 20 : 406-416, 1971

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Aziz, R. K., "The RAST Server : rapid annotations using subsystems technology" 9 : 75-, 2008

      5 Federhen, S, "The NCBI taxonomy database" 40 : D136-D143, 2012

      6 Tatusov, R. L., "The COG database : an updated version includes eukaryotes" 4 : 41-, 2003

      7 Richter, M., "Shifting the genomic gold standard for the prokaryotic species definition" 106 : 19126-19131, 2009

      8 Pruesse, E., "SINA : accurate high-throughput multiple sequence alignment of ribosomal RNA genes" 28 : 1823-1829, 2012

      9 Shida, O., "Proposal of Bacillus reuszeri sp. nov., Bacillus formosus sp. nov., nom. rev., and Bacillus borstelensis sp. nov., nom. rev" 45 : 93-100, 1995

      10 Shida, O., "Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov" 46 : 939-946, 1996

      1 Medema, M. H., "antiSMASH : Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences" 39 : W339-W346, 2011

      2 Fitch, W. M, "Toward defining the course of evolution : minimum change for a specific tree topology" 20 : 406-416, 1971

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Aziz, R. K., "The RAST Server : rapid annotations using subsystems technology" 9 : 75-, 2008

      5 Federhen, S, "The NCBI taxonomy database" 40 : D136-D143, 2012

      6 Tatusov, R. L., "The COG database : an updated version includes eukaryotes" 4 : 41-, 2003

      7 Richter, M., "Shifting the genomic gold standard for the prokaryotic species definition" 106 : 19126-19131, 2009

      8 Pruesse, E., "SINA : accurate high-throughput multiple sequence alignment of ribosomal RNA genes" 28 : 1823-1829, 2012

      9 Shida, O., "Proposal of Bacillus reuszeri sp. nov., Bacillus formosus sp. nov., nom. rev., and Bacillus borstelensis sp. nov., nom. rev" 45 : 93-100, 1995

      10 Shida, O., "Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov" 46 : 939-946, 1996

      11 Lee, I., "OrthoANI : An improved algorithm and software for calculating average nucleotide identity" 66 : 1100-1103, 2016

      12 Chin, C. S., "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data" 10 : 563-569, 2013

      13 Kumar, S., "MEGA7 : molecular evolutionary genetics analysis version 7. 0 for bigger datasets" 33 : 1870-1874, 2016

      14 Yoon, S. H., "Introducing EzBioCloud : a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies" 67 : 1613-1617, 2017

      15 Meier-Kolthoff, J. P., "Genome sequence-based species delimitation with confidence intervals and improved distance functions" 14 : 60-, 2013

      16 Sharma, V., "Genome sequence of Brevibacillus laterosporus strain GI-9" 194 : 1279-, 2012

      17 Hotchkiss, R. D., "Fractionation of the bactericidal agent from cultures of a soil Bacillus" 132 : 791-792, 1940

      18 Goris, J., "DNA-DNA hybridization values and their relationship to whole-genome sequence similarities" 57 : 81-91, 2007

      19 Felsenstein, J, "Confidence limits on phylogenies : an approach using the bootstrap" 39 : 783-791, 1985

      20 Takagi, H., "Characterization of Bacillus brevis with descriptions of Bacillus migulanus sp. nov., Bacillus choshinensis sp. nov., Bacillus parabrevis sp. nov., and Bacillus galactophilus sp. nov" 43 : 221-231, 1993

      21 Kim, M. K., "Brevibacillus panacihumi sp. nov., a β-glucosidase-producing bacterium" 59 : 1227-1231, 2009

      22 Takebe, F., "Brevibacillus nitrificans sp. nov., a nitrifying bacterium isolated from a microbiological agent for enhancing microbial digestion in sewage treatment tanks" 62 : 2121-2126, 2012

      23 Ruiu, L, "Brevibacillus laterosporus, a pathogen of invertebrates and a broad-spectrum antimicrobial species" 4 : 476-492, 2013

      24 Song, J., "Brevibacillus halotolerans sp. nov., isolated from saline soil of a paddy field" 67 : 772-777, 2017

      25 Inan, K., "Brevibacillus gelatinis sp. nov., isolated from a hot spring" 66 : 712-718, 2016

      26 Choi, M. J., "Brevibacillus fluminis sp. nov., isolated from sediment of estuarine wetland" 60 : 1595-1599, 2010

      27 Logan, N. A., "Bergey’s Manual of Systematic Bacteriology, vol. 3" Springer 304-316, 2009

      28 Yang, X., "Antimicrobial peptides produced by Brevibacillus spp. : structure, classification and bioativity : a mini review" 34 : 57-, 2018

      29 Sumi, C. D., "Antimicrobial peptides of the genus Bacillus : a new era for antibiotics" 61 : 93-109, 2015

      30 Minnikin, D. E., "An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids" 2 : 233-241, 1984

      31 Liu, B., "ARDB-Antibiotic Resistance Genes Database" 37 : D443-D447, 2009

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