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      Drug Target Identification and Elucidation of Natural Inhibitors for Bordetella petrii: An In Silico Study

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      https://www.riss.kr/link?id=A104427033

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      다국어 초록 (Multilingual Abstract)

      Environmental microbes like Bordetella petrii has been established as a causative agent for various infectious diseases in human. Again, development of drug resistance in B. petrii challenged to combat against the infection. Identification of potential drug target and proposing a novel lead compound against the pathogen has a great aid and value. In this study, bioinformatics tools and technology have been applied to suggest a potential drug target by screening the proteome information of B. petrii DSM 12804 (accession No. PRJNA28135) from genome database of National Centre for Biotechnology information. In this regards, the inhibitory effect of nine natural compounds like ajoene (Allium sativum), allicin (A. sativum), cinnamaldehyde (Cinnamomum cassia), curcumin (Curcuma longa), gallotannin (active component of green tea and red wine), isoorientin (Anthopterus wardii), isovitexin (A. wardii), neral (Melissa officinalis), and vitexin (A.
      wardii) have been acknowledged with anti-bacterial properties and hence tested against identified drug target of B. petrii by implicating computational approach. The in silico studies revealed the hypothesis that lpxD could be a potential drug target and with recommendation of a strong inhibitory effect of selected natural compounds against infection caused due to B.
      petrii, would be further validated through in vitro experiments.
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      Environmental microbes like Bordetella petrii has been established as a causative agent for various infectious diseases in human. Again, development of drug resistance in B. petrii challenged to combat against the infection. Identification of potentia...

      Environmental microbes like Bordetella petrii has been established as a causative agent for various infectious diseases in human. Again, development of drug resistance in B. petrii challenged to combat against the infection. Identification of potential drug target and proposing a novel lead compound against the pathogen has a great aid and value. In this study, bioinformatics tools and technology have been applied to suggest a potential drug target by screening the proteome information of B. petrii DSM 12804 (accession No. PRJNA28135) from genome database of National Centre for Biotechnology information. In this regards, the inhibitory effect of nine natural compounds like ajoene (Allium sativum), allicin (A. sativum), cinnamaldehyde (Cinnamomum cassia), curcumin (Curcuma longa), gallotannin (active component of green tea and red wine), isoorientin (Anthopterus wardii), isovitexin (A. wardii), neral (Melissa officinalis), and vitexin (A.
      wardii) have been acknowledged with anti-bacterial properties and hence tested against identified drug target of B. petrii by implicating computational approach. The in silico studies revealed the hypothesis that lpxD could be a potential drug target and with recommendation of a strong inhibitory effect of selected natural compounds against infection caused due to B.
      petrii, would be further validated through in vitro experiments.

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      참고문헌 (Reference)

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      7 Badger J, "Structure determination of LpxD from the lipopolysaccharide-synthesis pathway of Acinetobacter baumannii" 69 (69): 6-9, 2013

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      10 Damte D, "Putative drug and vaccine target protein identification using comparative genomic analysis of KEGG annotated metabolic pathways of Mycoplasma hyopneumoniae" 102 : 47-56, 2013

      1 Colovos C, "Verification of protein structures: patterns of nonbonded atomic interactions" 2 : 1511-1519, 1993

      2 Moissenet D, "Use of 16S rRNA gene sequencing for identification of “Pseudomonas-like” isolates from sputum of patients with cystic fibrosis" 53 : 500-502, 2005

      3 Gross R, "The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae" 9 : 449-, 2008

      4 Szklarczyk D, "The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored" 39 : D561-D568, 2011

      5 Niu C, "Subinhibitory concentrations of cinnamaldehyde interfere with quorum sensing" 43 : 489-494, 2006

      6 Lovell SC, "Structure validation by Calpha geometry:phi,psi and Cbeta deviation" 50 : 437-450, 2003

      7 Badger J, "Structure determination of LpxD from the lipopolysaccharide-synthesis pathway of Acinetobacter baumannii" 69 (69): 6-9, 2013

      8 Buetow L, "Structure and reactivity of LpxD, the N-acyltransferase of lipid A biosynthesis" 104 : 4321-4326, 2007

      9 Nogi M, "Septic arthritis and osteomyelitis due to Bordetella petrii" 53 : 1024-1027, 2015

      10 Damte D, "Putative drug and vaccine target protein identification using comparative genomic analysis of KEGG annotated metabolic pathways of Mycoplasma hyopneumoniae" 102 : 47-56, 2013

      11 Kelley LA, "Protein structure prediction on the Web: a case study using the Phyre server" 4 : 363-371, 2009

      12 Wiederstein M, "ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins" 35 : W407-W410, 2007

      13 Anishetty S, "Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis" 29 : 368-378, 2005

      14 Haag NL, "Potential antibacterial targets in bacterial central metabolism" 4 : 21-32, 2012

      15 Jalal Z, "Phytochemistry of the essential oil of Melissa officinalis L. growing wild in Morocco: preventive approach against nosocomial infections" 5 : 458-461, 2015

      16 Hu J, "Multicenter prospective epidemiological studies on Haemophilus influenzae infection among hospitalized children with lower respiratory tract infections" 54 : 119-125, 2016

      17 Barb AW, "Mechanism and inhibition of LpxC: an essential zinc-dependent deacetylase of bacterial lipid A synthesis" 9 : 9-15, 2008

      18 Wang X, "Lipopolysaccharide: biosynthetic pathway and structure modification" 49 : 97-107, 2010

      19 Rosenfeld Y, "Lipopolysaccharide (Endotoxin)-host defense antibacterial peptides interactions: role in bacterial resistance and prevention of sepsis" 1758 : 1513-1522, 2006

      20 Kanehisa M, "KEGG as a reference resource for gene and protein annotation" 44 (44): D457-D462, 2016

      21 Wang F, "Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil" 67 : 896-902, 2007

      22 Namkung W, "Inhibition of Ca2+-activated Cl- channels by gallotannins as a possible molecular basis for health benefits of red wine and green tea" 24 : 4178-4186, 2010

      23 In Silico Biol, "In silico identification of candidate drug and vaccine targets from various pathways in Neisseria gonorrhoeae" 9 : 225-231, 2009

      24 Ravindranath BS, "In silico analyses of metabolic pathway and protein interaction network for identification of next gen therapeutic targets in Chlamydophila pneumoniae" 9 : 605-609, 2013

      25 Xu D, "Improving the physical realism and structural accuracy of protein models by a two-step atomic-level energy minimization" 101 : 2525-2534, 2011

      26 Chowdhury SP, "Identification of diazotrophs in the culturable bacterial community associated with roots of Lasiurus sindicus, a perennial grass of Thar Desert, India" 54 : 82-90, 2007

      27 Spilker T, "Identification of Bordetella spp. in respiratory specimens from individuals with cystic fibrosis" 14 : 504-506, 2008

      28 Shanmugham B, "Identification and characterization of potential therapeutic candidates in emerging human pathogen Mycobacterium abscessus: a novel hierarchical in silico approach" 8 : e59126-, 2013

      29 Alshalchi SA, "Expression of the lipopolysaccharide biosynthesis gene lpxD affects biofilm formation of Pseudomonas aeruginosa" 197 : 135-145, 2015

      30 Manaswini Jagadeb, "Elucidation of the Inhibitory Effect of Phytochemicals with Kir6.2 Wild-Type and Mutant Models Associated in Type-1 Diabetes through Molecular Docking Approach" 한국유전체학회 12 (12): 283-288, 2014

      31 Satish Kumar, "Elucidating Molecular Interactions of Natural Inhibitors with HPV-16 E6 Oncoprotein through Docking Analysis" 한국유전체학회 12 (12): 64-70, 2014

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      33 Niu C, "Colorimetric method for identifying plant essential oil components that affect biofilm formation and structure" 70 : 6951-6956, 2004

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      35 Wallner B, "Can correct protein models be identified?" 12 : 1073-1086, 2003

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      37 Le Coustumier A, "Bordetella petrii infection with long-lasting persistence in human" 17 : 612-618, 2011

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      41 Bianchi F, "Bioremediation of toluene and naphthalene: development and validation of a GC-FID method for their monitoring" 95 : 515-524, 2005

      42 Morris GM, "AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility" 30 : 2785-2791, 2009

      43 Flores G, "Antioxidants of therapeutic relevance in COPD from the neotropical blueberry Anthopterus wardii" 131 : 119-125, 2012

      44 Conway SP, "Antibiotic treatment of multidrug-resistant organisms in cystic fibrosis" 2 : 321-332, 2003

      45 Gómez-Cerezo J, "Achromobacter xylosoxidans bacteremia: a 10-year analysis of 54 cases" 22 : 360-363, 2003

      46 Vetrivel U, "A novel in silico approach to identify potential therapeutic targets in human bacterial pathogens" 5 : 25-34, 2011

      47 Sakharkar KR, "A novel genomics approach for the identification of drug targets in pathogens, with special reference to Pseudomonas aeruginosa" 4 : 355-360, 2004

      48 Sfanos K, "A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates" 28 : 242-264, 2005

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      2020 평가예정 신규평가 신청대상 (신규평가)
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      2016 0.11 0.11 0.13
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